bio-polymarker_db_batch 0.1.0 → 0.2.0
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- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/lib/bio-polymarker_db_batch/polymarker_db_batch.rb +18 -11
- data/test/test_email.rb +43 -0
- metadata +3 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: da45b3e074939e929a4f033239ea1266513885e6
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4
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+
data.tar.gz: 4d5a1811ae63656af0180ca532b6618048c371e1
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 8a0df21c2eaf9d19fdcf5df49248415b88931f2197139f1a3cef62c776cda476008518f56b42f9e5b7ea1601a87d0fb67117ed7122ead257589dcf97457620cd
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7
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+
data.tar.gz: 379bc02e20d8599eb2a88deb2e037a51d8043a125217d8ff3fa07376bd11a42b034a65aff544771d4e143c0bd8b0f6acecb79b73c59e4cde3db3144ee46ecb77
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data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
0.
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1
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+
0.2.0
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@@ -4,7 +4,7 @@ class Bio::DB::Polymarker
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4
4
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5
5
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def initialize( props)
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6
6
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@properties =Hash[*File.read(props).split(/[=\n]+/)]
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7
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-
puts @properties.inspect
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7
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+
#puts @properties.inspect
|
8
8
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end
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9
9
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10
10
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def mysql_version
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@@ -69,24 +69,31 @@ class Bio::DB::Polymarker
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69
69
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pst = con.prepare "UPDATE snp_file SET status = ? WHERE snp_file_id = ?"
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70
70
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pst.execute new_status, snp_file_id
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71
71
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con.commit
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72
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+
begin
|
73
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+
send_email(to,id, status)
|
74
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+
rescue
|
75
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+
puts "Error sending email."
|
76
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+
end
|
72
77
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end
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73
78
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|
74
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-
def send_email(to,
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75
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-
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76
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-
opts[:from] ||= 'polymarker@tgac.ac.uk'
|
77
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-
opts[:from_alias] ||= 'Example Emailer'
|
78
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-
opts[:subject] ||= "You need to see this"
|
79
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-
opts[:body] ||= "Important stuff!"
|
79
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+
def send_email(to,id, status)
|
80
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+
options = @properties
|
80
81
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|
81
82
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msg = <<END_OF_MESSAGE
|
82
|
-
From: #{
|
83
|
+
From: #{options['email_from_alias']} <#{options['email_from']}>
|
83
84
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To: <#{to}>
|
84
|
-
Subject: #{
|
85
|
+
Subject: Polymarker #{id} #{status}
|
86
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+
|
87
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+
The current status of your request (#{id}) is #{status}
|
88
|
+
The latest status and results (when done) are available in: #{options['web_domain']}/status?id=#{id}
|
89
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+
|
85
90
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|
86
91
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#{opts[:body]}
|
87
92
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END_OF_MESSAGE
|
88
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-
Net::SMTP.
|
89
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-
|
93
|
+
smtp = Net::SMTP.new options["email_server"], 587
|
94
|
+
smtp.enable_starttls
|
95
|
+
smtp.start( options["email_domain"], options["email_user"], options["email_pwd"], :login) do
|
96
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+
smtp.send_message(msg, options["email_from"], to)
|
90
97
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end
|
91
98
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end
|
92
99
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|
data/test/test_email.rb
ADDED
@@ -0,0 +1,43 @@
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1
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+
#!/usr/bin/env ruby
|
2
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+
#require 'bioruby-polyploid-tools'
|
3
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+
require 'optparse'
|
4
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+
require 'mysql'
|
5
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+
require 'net/smtp'
|
6
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+
|
7
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+
#$: << File.expand_path(File.dirname(__FILE__) + '/../lib')
|
8
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+
#$: << File.expand_path('.')
|
9
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+
#path=File.expand_path(File.dirname(__FILE__) + '/../lib/bio-polymarker_db_batch.rb')
|
10
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+
#$stderr.puts "Loading: #{path}"
|
11
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+
#require path
|
12
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+
|
13
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+
#options = {}
|
14
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+
props = ""
|
15
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+
|
16
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+
OptionParser.new do |opts|
|
17
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+
opts.banner = "Usage: run_pending_polymarker.rb [options]"
|
18
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+
|
19
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+
opts.on("-p", "--preferences FILE" "File with the preferences") do |o|
|
20
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+
props = o
|
21
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+
end
|
22
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+
|
23
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+
end.parse!
|
24
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+
options =Hash[*File.read(props).split(/[=\n]+/)]
|
25
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+
to = "ricardo.ramirez-gonzalez@tgac.ac.uk"
|
26
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+
msg = <<END_OF_MESSAGE
|
27
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+
From: #{options['email_from_alias']} <#{options['email_from']}>
|
28
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+
To: <#{to}>
|
29
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+
Subject: Test from ruby
|
30
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+
|
31
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+
The text we are sending!
|
32
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+
END_OF_MESSAGE
|
33
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+
|
34
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+
puts options.inspect
|
35
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+
smtp = Net::SMTP.new options["email_server"], 587
|
36
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+
smtp.enable_starttls
|
37
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+
smtp.start( options["email_domain"], options["email_user"], options["email_pwd"], :login) do
|
38
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+
smtp.send_message(msg, options["email_from"], to)
|
39
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+
end
|
40
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+
|
41
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+
#Net::SMTP.start(options["email_server"], 25, options["email_domain"], options["email_user"], options["email_pwd"], :cram_md5) do |smtp|
|
42
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+
# smtp.send_message msg, opts[:from], to
|
43
|
+
#end
|
metadata
CHANGED
@@ -1,14 +1,14 @@
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|
1
1
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--- !ruby/object:Gem::Specification
|
2
2
|
name: bio-polymarker_db_batch
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.
|
4
|
+
version: 0.2.0
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Ricardo H. Ramirez-Gonzalez
|
8
8
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autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2014-07-
|
11
|
+
date: 2014-07-21 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: bio-polyploid-tools
|
@@ -147,6 +147,7 @@ files:
|
|
147
147
|
- lib/bio-polymarker_db_batch/polymarker_db_batch.rb
|
148
148
|
- test/helper.rb
|
149
149
|
- test/test_bio-polymarker_db_batch.rb
|
150
|
+
- test/test_email.rb
|
150
151
|
homepage: http://github.com/homonecloco/bioruby-polymarker_db_batch
|
151
152
|
licenses:
|
152
153
|
- MIT
|