bio-plasmoap 0.0.1 → 0.0.2

data/Gemfile

@@ -1,5 +1,6 @@
 source "http://rubygems.org"
 
+gem 'bio', '>=1.4.1'
 gem 'bio-signalp', '>=0.2.0'
 
 # Add dependencies to develop your gem here.

data/VERSION

@@ -1 +1 @@
-0.0.1
+0.0.2

data/bin/plasmoap.rb

@@ -1,4 +1,7 @@
+#!/usr/bin/env ruby
 
+require 'rubygems'
+require 'bio'
 require 'bio-plasmoap'
 
 if $0 == __FILE__

data/bio-plasmoap.gemspec

@@ -0,0 +1,70 @@
+# Generated by jeweler
+# DO NOT EDIT THIS FILE DIRECTLY
+# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
+# -*- encoding: utf-8 -*-
+
+Gem::Specification.new do |s|
+  s.name = %q{bio-plasmoap}
+  s.version = "0.0.2"
+
+  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.authors = [%q{Ben J Woodcroft}]
+  s.date = %q{2012-01-06}
+  s.description = %q{The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptides in Plasmodium falciparum. This is an implementation of that algorithm.}
+  s.email = %q{gmail.com after donttrustben}
+  s.executables = [%q{plasmoap.rb}]
+  s.extra_rdoc_files = [
+    "LICENSE.txt",
+    "README.rdoc"
+  ]
+  s.files = [
+    ".document",
+    "Gemfile",
+    "LICENSE.txt",
+    "README.rdoc",
+    "Rakefile",
+    "VERSION",
+    "bin/plasmoap.rb",
+    "bio-plasmoap.gemspec",
+    "lib/bio-plasmoap.rb",
+    "lib/bio/appl/plasmoap.rb",
+    "test/helper.rb",
+    "test/test_bio-plasmoap.rb"
+  ]
+  s.homepage = %q{http://github.com/wwood/bioruby-plasmoap}
+  s.licenses = [%q{MIT}]
+  s.require_paths = [%q{lib}]
+  s.rubygems_version = %q{1.8.6}
+  s.summary = %q{Implementation of the PlasmoAP algorithm}
+
+  if s.respond_to? :specification_version then
+    s.specification_version = 3
+
+    if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
+      s.add_runtime_dependency(%q<bio>, [">= 1.4.1"])
+      s.add_runtime_dependency(%q<bio-signalp>, [">= 0.2.0"])
+      s.add_development_dependency(%q<shoulda>, [">= 0"])
+      s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
+      s.add_development_dependency(%q<jeweler>, ["~> 1.6.4"])
+      s.add_development_dependency(%q<rcov>, [">= 0"])
+      s.add_development_dependency(%q<bio>, [">= 1.4.1"])
+    else
+      s.add_dependency(%q<bio>, [">= 1.4.1"])
+      s.add_dependency(%q<bio-signalp>, [">= 0.2.0"])
+      s.add_dependency(%q<shoulda>, [">= 0"])
+      s.add_dependency(%q<bundler>, ["~> 1.0.0"])
+      s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
+      s.add_dependency(%q<rcov>, [">= 0"])
+      s.add_dependency(%q<bio>, [">= 1.4.1"])
+    end
+  else
+    s.add_dependency(%q<bio>, [">= 1.4.1"])
+    s.add_dependency(%q<bio-signalp>, [">= 0.2.0"])
+    s.add_dependency(%q<shoulda>, [">= 0"])
+    s.add_dependency(%q<bundler>, ["~> 1.0.0"])
+    s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
+    s.add_dependency(%q<rcov>, [">= 0"])
+    s.add_dependency(%q<bio>, [">= 1.4.1"])
+  end
+end
+

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-plasmoap
 version: !ruby/object:Gem::Version
-  version: 0.0.1
+  version: 0.0.2
   prerelease: 
 platform: ruby
 authors:
@@ -11,9 +11,20 @@ bindir: bin
 cert_chain: []
 date: 2012-01-06 00:00:00.000000000Z
 dependencies:
+- !ruby/object:Gem::Dependency
+  name: bio
+  requirement: &80036180 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: 1.4.1
+  type: :runtime
+  prerelease: false
+  version_requirements: *80036180
 - !ruby/object:Gem::Dependency
   name: bio-signalp
-  requirement: &69055880 !ruby/object:Gem::Requirement
+  requirement: &80034850 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -21,10 +32,10 @@ dependencies:
         version: 0.2.0
   type: :runtime
   prerelease: false
-  version_requirements: *69055880
+  version_requirements: *80034850
 - !ruby/object:Gem::Dependency
   name: shoulda
-  requirement: &68875950 !ruby/object:Gem::Requirement
+  requirement: &79901560 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -32,10 +43,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *68875950
+  version_requirements: *79901560
 - !ruby/object:Gem::Dependency
   name: bundler
-  requirement: &68874120 !ruby/object:Gem::Requirement
+  requirement: &79900380 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -43,10 +54,10 @@ dependencies:
         version: 1.0.0
   type: :development
   prerelease: false
-  version_requirements: *68874120
+  version_requirements: *79900380
 - !ruby/object:Gem::Dependency
   name: jeweler
-  requirement: &68872090 !ruby/object:Gem::Requirement
+  requirement: &79899470 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -54,10 +65,10 @@ dependencies:
         version: 1.6.4
   type: :development
   prerelease: false
-  version_requirements: *68872090
+  version_requirements: *79899470
 - !ruby/object:Gem::Dependency
   name: rcov
-  requirement: &68870680 !ruby/object:Gem::Requirement
+  requirement: &79898480 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -65,10 +76,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *68870680
+  version_requirements: *79898480
 - !ruby/object:Gem::Dependency
   name: bio
-  requirement: &68869790 !ruby/object:Gem::Requirement
+  requirement: &79897650 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -76,7 +87,7 @@ dependencies:
         version: 1.4.1
   type: :development
   prerelease: false
-  version_requirements: *68869790
+  version_requirements: *79897650
 description: The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast
   transit peptides in Plasmodium falciparum. This is an implementation of that algorithm.
 email: gmail.com after donttrustben
@@ -94,6 +105,7 @@ files:
 - Rakefile
 - VERSION
 - bin/plasmoap.rb
+- bio-plasmoap.gemspec
 - lib/bio-plasmoap.rb
 - lib/bio/appl/plasmoap.rb
 - test/helper.rb
@@ -113,7 +125,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: -824018541
+      hash: -875790545
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: