bio-pipengine 0.9.0 → 0.9.1
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- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/lib/bio/pipengine.rb +3 -3
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 4d2869af147bec6a8aaf5072ecda70f70db62aa3
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4
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+
data.tar.gz: 09f5a3b2d09db2abd793486f5c3ddd48156cae19
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 1e431f8421d5946a8a7c0b0ea049c7f95b2f83fc2c1bfbd57cfb45d06c714453917ba84f8746dc8541158c46834c6c6de565236fb9e4f69df1630eea60582af7
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7
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+
data.tar.gz: 2335be0113846f1c9f9ab4f66edba92c8a49e32cb3bc7e10f8e749293ab7245aaf10ba9aea1e334d887bb7d49a96e07f71743184273f50bcabab573fa2eda019
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data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.9.
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1
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+
0.9.1
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data/lib/bio/pipengine.rb
CHANGED
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@@ -44,7 +44,7 @@ module Bio
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44
44
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45
45
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unless run_multi # there are no multi-samples steps, so iterate on samples and create one job per sample
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46
46
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samples_list.each_key do |sample_name|
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47
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-
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47
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+
sample = Bio::Pipengine::Sample.new(sample_name.to_s,samples_list[sample_name],options[:group])
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48
48
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create_job(samples_file,pipeline,samples_list,options,sample)
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49
49
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end
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50
50
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end
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@@ -170,10 +170,10 @@ module Bio
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170
170
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puts "\n"
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171
171
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end
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172
172
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173
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-
# create the samples.yml file
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173
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+
# create the samples.yml file
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174
174
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def self.create_samples(dir)
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175
175
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File.open("samples.yml","w") do |file|
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176
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-
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176
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+
file.write "resources:\n\soutput: #{`pwd -L`}\n\nsamples:\n"
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177
177
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samples = Hash.new {|hash,key| hash[key] = []}
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178
178
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dir.each do |path|
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179
179
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projects = Dir.glob(path+"/*").sort.select {|folders| folders.split("/")[-1] =~/Project_/}
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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|
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: bio-pipengine
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.9.
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4
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+
version: 0.9.1
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5
5
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platform: ruby
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6
6
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authors:
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|
7
7
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- Francesco Strozzi
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@@ -9,7 +9,7 @@ authors:
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9
9
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autorequire:
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10
10
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bindir: bin
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|
11
11
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cert_chain: []
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12
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-
date: 2016-04-
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|
12
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+
date: 2016-04-27 00:00:00.000000000 Z
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|
13
13
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dependencies:
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|
14
14
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- !ruby/object:Gem::Dependency
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|
15
15
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name: trollop
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