bio-pipengine 0.9.0 → 0.9.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/lib/bio/pipengine.rb +3 -3
- metadata +2 -2
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 4d2869af147bec6a8aaf5072ecda70f70db62aa3
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data.tar.gz: 09f5a3b2d09db2abd793486f5c3ddd48156cae19
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 1e431f8421d5946a8a7c0b0ea049c7f95b2f83fc2c1bfbd57cfb45d06c714453917ba84f8746dc8541158c46834c6c6de565236fb9e4f69df1630eea60582af7
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data.tar.gz: 2335be0113846f1c9f9ab4f66edba92c8a49e32cb3bc7e10f8e749293ab7245aaf10ba9aea1e334d887bb7d49a96e07f71743184273f50bcabab573fa2eda019
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data/VERSION
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@@ -1 +1 @@
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1
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-
0.9.
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0.9.1
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data/lib/bio/pipengine.rb
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@@ -44,7 +44,7 @@ module Bio
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unless run_multi # there are no multi-samples steps, so iterate on samples and create one job per sample
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samples_list.each_key do |sample_name|
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-
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sample = Bio::Pipengine::Sample.new(sample_name.to_s,samples_list[sample_name],options[:group])
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create_job(samples_file,pipeline,samples_list,options,sample)
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end
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end
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@@ -170,10 +170,10 @@ module Bio
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puts "\n"
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end
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# create the samples.yml file
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# create the samples.yml file
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def self.create_samples(dir)
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File.open("samples.yml","w") do |file|
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-
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file.write "resources:\n\soutput: #{`pwd -L`}\n\nsamples:\n"
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samples = Hash.new {|hash,key| hash[key] = []}
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dir.each do |path|
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projects = Dir.glob(path+"/*").sort.select {|folders| folders.split("/")[-1] =~/Project_/}
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metadata
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@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: bio-pipengine
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version: !ruby/object:Gem::Version
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version: 0.9.
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version: 0.9.1
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platform: ruby
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authors:
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- Francesco Strozzi
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@@ -9,7 +9,7 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2016-04-
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date: 2016-04-27 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: trollop
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