bio-ngs 0.4.5.alpha.01 → 0.4.6.alpha.01

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Files changed (3) hide show
  1. data/VERSION +1 -1
  2. data/bio-ngs.gemspec +1 -1
  3. metadata +66 -66
data/VERSION CHANGED
@@ -1 +1 @@
1
- 0.4.5.alpha.01
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+ 0.4.6.alpha.01
data/bio-ngs.gemspec CHANGED
@@ -5,7 +5,7 @@
5
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  Gem::Specification.new do |s|
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  s.name = "bio-ngs"
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- s.version = "0.4.4.alpha.01"
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+ s.version = "0.4.6.alpha.01"
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  s.required_rubygems_version = Gem::Requirement.new("> 1.3.1") if s.respond_to? :required_rubygems_version=
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  s.authors = ["Francesco Strozzi", "Raoul J.P. Bonnal"]
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
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  name: bio-ngs
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  version: !ruby/object:Gem::Version
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- version: 0.4.5.alpha.01
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+ version: 0.4.6.alpha.01
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  prerelease: 6
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  platform: ruby
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  authors:
@@ -14,7 +14,7 @@ date: 2012-03-21 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: bio
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- requirement: &2157544880 !ruby/object:Gem::Requirement
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+ requirement: &2166120140 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -22,10 +22,10 @@ dependencies:
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  version: 1.4.2
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157544880
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+ version_requirements: *2166120140
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  - !ruby/object:Gem::Dependency
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  name: bio-samtools
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- requirement: &2157542920 !ruby/object:Gem::Requirement
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+ requirement: &2166117920 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -33,10 +33,10 @@ dependencies:
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  version: 0.3.2
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157542920
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+ version_requirements: *2166117920
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  - !ruby/object:Gem::Dependency
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  name: thor
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- requirement: &2157557820 !ruby/object:Gem::Requirement
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+ requirement: &2166248820 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -44,10 +44,10 @@ dependencies:
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  version: 0.14.6
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157557820
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+ version_requirements: *2166248820
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  - !ruby/object:Gem::Dependency
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  name: rubyvis
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- requirement: &2157556680 !ruby/object:Gem::Requirement
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+ requirement: &2166247760 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -55,10 +55,10 @@ dependencies:
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  version: 0.5.0
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157556680
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+ version_requirements: *2166247760
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  - !ruby/object:Gem::Dependency
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  name: daemons
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- requirement: &2157555760 !ruby/object:Gem::Requirement
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+ requirement: &2166246800 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -66,10 +66,10 @@ dependencies:
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  version: 1.1.0
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157555760
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+ version_requirements: *2166246800
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  - !ruby/object:Gem::Dependency
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  name: ruby-ensembl-api
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- requirement: &2157554600 !ruby/object:Gem::Requirement
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+ requirement: &2166245540 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -77,10 +77,10 @@ dependencies:
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  version: 1.0.1
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157554600
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+ version_requirements: *2166245540
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  - !ruby/object:Gem::Dependency
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  name: activerecord
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- requirement: &2157553420 !ruby/object:Gem::Requirement
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+ requirement: &2166244540 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -88,10 +88,10 @@ dependencies:
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  version: 3.0.5
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157553420
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+ version_requirements: *2166244540
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  - !ruby/object:Gem::Dependency
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  name: sqlite3
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- requirement: &2157552540 !ruby/object:Gem::Requirement
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+ requirement: &2166243560 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -99,10 +99,10 @@ dependencies:
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  version: 1.3.3
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157552540
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+ version_requirements: *2166243560
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  - !ruby/object:Gem::Dependency
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  name: bio-blastxmlparser
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- requirement: &2157551480 !ruby/object:Gem::Requirement
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+ requirement: &2166242560 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -110,10 +110,10 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157551480
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+ version_requirements: *2166242560
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  - !ruby/object:Gem::Dependency
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  name: progressbar
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- requirement: &2157550620 !ruby/object:Gem::Requirement
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+ requirement: &2166241680 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -121,10 +121,10 @@ dependencies:
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  version: 0.9.0
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157550620
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+ version_requirements: *2166241680
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  - !ruby/object:Gem::Dependency
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  name: rake
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- requirement: &2157566100 !ruby/object:Gem::Requirement
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+ requirement: &2166257200 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - =
@@ -132,10 +132,10 @@ dependencies:
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  version: 0.9.2.2
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157566100
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+ version_requirements: *2166257200
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  - !ruby/object:Gem::Dependency
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  name: json
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- requirement: &2157564540 !ruby/object:Gem::Requirement
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+ requirement: &2166255420 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -143,10 +143,10 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157564540
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+ version_requirements: *2166255420
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  - !ruby/object:Gem::Dependency
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  name: parallel
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- requirement: &2157561780 !ruby/object:Gem::Requirement
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+ requirement: &2166252880 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -154,10 +154,10 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *2157561780
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+ version_requirements: *2166252880
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  - !ruby/object:Gem::Dependency
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  name: shoulda
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- requirement: &2157574380 !ruby/object:Gem::Requirement
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+ requirement: &2166375840 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -165,10 +165,10 @@ dependencies:
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *2157574380
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+ version_requirements: *2166375840
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  - !ruby/object:Gem::Dependency
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  name: bundler
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- requirement: &2157572660 !ruby/object:Gem::Requirement
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+ requirement: &2166373980 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -176,10 +176,10 @@ dependencies:
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  version: 1.1.0
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  type: :development
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  prerelease: false
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- version_requirements: *2157572660
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+ version_requirements: *2166373980
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  - !ruby/object:Gem::Dependency
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  name: jeweler
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- requirement: &2157571880 !ruby/object:Gem::Requirement
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+ requirement: &2166373320 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -187,10 +187,10 @@ dependencies:
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  version: 1.8.3
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  type: :development
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  prerelease: false
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- version_requirements: *2157571880
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+ version_requirements: *2166373320
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  - !ruby/object:Gem::Dependency
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  name: rcov
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- requirement: &2157571380 !ruby/object:Gem::Requirement
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+ requirement: &2166372800 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -198,10 +198,10 @@ dependencies:
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  version: 0.9.11
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  type: :development
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  prerelease: false
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- version_requirements: *2157571380
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+ version_requirements: *2166372800
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  - !ruby/object:Gem::Dependency
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  name: bio
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- requirement: &2157578140 !ruby/object:Gem::Requirement
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+ requirement: &2166379100 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -209,10 +209,10 @@ dependencies:
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  version: 1.4.2
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  type: :development
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  prerelease: false
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- version_requirements: *2157578140
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+ version_requirements: *2166379100
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  - !ruby/object:Gem::Dependency
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  name: thor
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- requirement: &2157576920 !ruby/object:Gem::Requirement
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+ requirement: &2166377460 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -220,10 +220,10 @@ dependencies:
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  version: 0.14.6
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  type: :development
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  prerelease: false
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- version_requirements: *2157576920
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+ version_requirements: *2166377460
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  - !ruby/object:Gem::Dependency
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  name: ffi
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- requirement: &2157590920 !ruby/object:Gem::Requirement
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+ requirement: &2166391740 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -231,10 +231,10 @@ dependencies:
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  version: 1.0.6
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  type: :development
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  prerelease: false
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- version_requirements: *2157590920
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+ version_requirements: *2166391740
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  - !ruby/object:Gem::Dependency
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  name: rubyvis
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- requirement: &2157589180 !ruby/object:Gem::Requirement
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+ requirement: &2166390020 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -242,10 +242,10 @@ dependencies:
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  version: 0.5.0
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  type: :development
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  prerelease: false
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- version_requirements: *2157589180
245
+ version_requirements: *2166390020
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  - !ruby/object:Gem::Dependency
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  name: rspec
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- requirement: &2157587220 !ruby/object:Gem::Requirement
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+ requirement: &2166388100 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -253,10 +253,10 @@ dependencies:
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  version: 2.5.0
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  type: :development
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  prerelease: false
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- version_requirements: *2157587220
256
+ version_requirements: *2166388100
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  - !ruby/object:Gem::Dependency
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  name: daemons
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- requirement: &2157585680 !ruby/object:Gem::Requirement
259
+ requirement: &2166386680 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -264,10 +264,10 @@ dependencies:
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  version: 1.1.0
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  type: :development
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  prerelease: false
267
- version_requirements: *2157585680
267
+ version_requirements: *2166386680
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  - !ruby/object:Gem::Dependency
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  name: bio-samtools
270
- requirement: &2157584920 !ruby/object:Gem::Requirement
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+ requirement: &2166386000 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -275,10 +275,10 @@ dependencies:
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  version: 0.3.2
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  type: :development
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  prerelease: false
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- version_requirements: *2157584920
278
+ version_requirements: *2166386000
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  - !ruby/object:Gem::Dependency
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  name: ruby-ensembl-api
281
- requirement: &2157584240 !ruby/object:Gem::Requirement
281
+ requirement: &2166385360 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -286,10 +286,10 @@ dependencies:
286
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  version: 1.0.1
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  type: :development
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  prerelease: false
289
- version_requirements: *2157584240
289
+ version_requirements: *2166385360
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  - !ruby/object:Gem::Dependency
291
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  name: activerecord
292
- requirement: &2157583260 !ruby/object:Gem::Requirement
292
+ requirement: &2166400500 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -297,10 +297,10 @@ dependencies:
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  version: 3.0.5
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  type: :development
299
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  prerelease: false
300
- version_requirements: *2157583260
300
+ version_requirements: *2166400500
301
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  - !ruby/object:Gem::Dependency
302
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  name: sqlite3
303
- requirement: &2157598260 !ruby/object:Gem::Requirement
303
+ requirement: &2166399280 !ruby/object:Gem::Requirement
304
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  none: false
305
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  requirements:
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  - - ! '>='
@@ -308,10 +308,10 @@ dependencies:
308
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  version: 1.3.3
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  type: :development
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  prerelease: false
311
- version_requirements: *2157598260
311
+ version_requirements: *2166399280
312
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  - !ruby/object:Gem::Dependency
313
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  name: bio-blastxmlparser
314
- requirement: &2157597220 !ruby/object:Gem::Requirement
314
+ requirement: &2166397820 !ruby/object:Gem::Requirement
315
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  none: false
316
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  requirements:
317
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  - - ! '>='
@@ -319,10 +319,10 @@ dependencies:
319
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  version: '0'
320
320
  type: :development
321
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  prerelease: false
322
- version_requirements: *2157597220
322
+ version_requirements: *2166397820
323
323
  - !ruby/object:Gem::Dependency
324
324
  name: progressbar
325
- requirement: &2157595700 !ruby/object:Gem::Requirement
325
+ requirement: &2166397040 !ruby/object:Gem::Requirement
326
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  none: false
327
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  requirements:
328
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  - - ! '>='
@@ -330,10 +330,10 @@ dependencies:
330
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  version: 0.9.0
331
331
  type: :development
332
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  prerelease: false
333
- version_requirements: *2157595700
333
+ version_requirements: *2166397040
334
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  - !ruby/object:Gem::Dependency
335
335
  name: json
336
- requirement: &2157595000 !ruby/object:Gem::Requirement
336
+ requirement: &2166396420 !ruby/object:Gem::Requirement
337
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  none: false
338
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  requirements:
339
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  - - ! '>='
@@ -341,10 +341,10 @@ dependencies:
341
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  version: '0'
342
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  type: :development
343
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  prerelease: false
344
- version_requirements: *2157595000
344
+ version_requirements: *2166396420
345
345
  - !ruby/object:Gem::Dependency
346
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  name: rake
347
- requirement: &2157593700 !ruby/object:Gem::Requirement
347
+ requirement: &2166395200 !ruby/object:Gem::Requirement
348
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  none: false
349
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  requirements:
350
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  - - =
@@ -352,10 +352,10 @@ dependencies:
352
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  version: 0.9.2.2
353
353
  type: :development
354
354
  prerelease: false
355
- version_requirements: *2157593700
355
+ version_requirements: *2166395200
356
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  - !ruby/object:Gem::Dependency
357
357
  name: parallel
358
- requirement: &2157592960 !ruby/object:Gem::Requirement
358
+ requirement: &2166394460 !ruby/object:Gem::Requirement
359
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  none: false
360
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  requirements:
361
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  - - ! '>='
@@ -363,7 +363,7 @@ dependencies:
363
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  version: '0'
364
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  type: :development
365
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  prerelease: false
366
- version_requirements: *2157592960
366
+ version_requirements: *2166394460
367
367
  description: bio-ngs provides a framework for handling NGS data with BioRuby
368
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  email: francesco.strozzi@gmail.com
369
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  executables:
@@ -469,7 +469,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
469
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  version: '0'
470
470
  segments:
471
471
  - 0
472
- hash: 1893794030483247013
472
+ hash: -1654016565511947688
473
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  required_rubygems_version: !ruby/object:Gem::Requirement
474
474
  none: false
475
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  requirements: