bio-ngs 0.4.5.alpha.01 → 0.4.6.alpha.01

data/VERSION

@@ -1 +1 @@
-0.4.5.alpha.01
+0.4.6.alpha.01

data/bio-ngs.gemspec

@@ -5,7 +5,7 @@
 
 Gem::Specification.new do |s|
   s.name = "bio-ngs"
-  s.version = "0.4.4.alpha.01"
+  s.version = "0.4.6.alpha.01"
 
   s.required_rubygems_version = Gem::Requirement.new("> 1.3.1") if s.respond_to? :required_rubygems_version=
   s.authors = ["Francesco Strozzi", "Raoul J.P. Bonnal"]

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-ngs
 version: !ruby/object:Gem::Version
-  version: 0.4.5.alpha.01
+  version: 0.4.6.alpha.01
   prerelease: 6
 platform: ruby
 authors:
@@ -14,7 +14,7 @@ date: 2012-03-21 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bio
-  requirement: &2157544880 !ruby/object:Gem::Requirement
+  requirement: &2166120140 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -22,10 +22,10 @@ dependencies:
         version: 1.4.2
   type: :runtime
   prerelease: false
-  version_requirements: *2157544880
+  version_requirements: *2166120140
 - !ruby/object:Gem::Dependency
   name: bio-samtools
-  requirement: &2157542920 !ruby/object:Gem::Requirement
+  requirement: &2166117920 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -33,10 +33,10 @@ dependencies:
         version: 0.3.2
   type: :runtime
   prerelease: false
-  version_requirements: *2157542920
+  version_requirements: *2166117920
 - !ruby/object:Gem::Dependency
   name: thor
-  requirement: &2157557820 !ruby/object:Gem::Requirement
+  requirement: &2166248820 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -44,10 +44,10 @@ dependencies:
         version: 0.14.6
   type: :runtime
   prerelease: false
-  version_requirements: *2157557820
+  version_requirements: *2166248820
 - !ruby/object:Gem::Dependency
   name: rubyvis
-  requirement: &2157556680 !ruby/object:Gem::Requirement
+  requirement: &2166247760 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -55,10 +55,10 @@ dependencies:
         version: 0.5.0
   type: :runtime
   prerelease: false
-  version_requirements: *2157556680
+  version_requirements: *2166247760
 - !ruby/object:Gem::Dependency
   name: daemons
-  requirement: &2157555760 !ruby/object:Gem::Requirement
+  requirement: &2166246800 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -66,10 +66,10 @@ dependencies:
         version: 1.1.0
   type: :runtime
   prerelease: false
-  version_requirements: *2157555760
+  version_requirements: *2166246800
 - !ruby/object:Gem::Dependency
   name: ruby-ensembl-api
-  requirement: &2157554600 !ruby/object:Gem::Requirement
+  requirement: &2166245540 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -77,10 +77,10 @@ dependencies:
         version: 1.0.1
   type: :runtime
   prerelease: false
-  version_requirements: *2157554600
+  version_requirements: *2166245540
 - !ruby/object:Gem::Dependency
   name: activerecord
-  requirement: &2157553420 !ruby/object:Gem::Requirement
+  requirement: &2166244540 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -88,10 +88,10 @@ dependencies:
         version: 3.0.5
   type: :runtime
   prerelease: false
-  version_requirements: *2157553420
+  version_requirements: *2166244540
 - !ruby/object:Gem::Dependency
   name: sqlite3
-  requirement: &2157552540 !ruby/object:Gem::Requirement
+  requirement: &2166243560 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -99,10 +99,10 @@ dependencies:
         version: 1.3.3
   type: :runtime
   prerelease: false
-  version_requirements: *2157552540
+  version_requirements: *2166243560
 - !ruby/object:Gem::Dependency
   name: bio-blastxmlparser
-  requirement: &2157551480 !ruby/object:Gem::Requirement
+  requirement: &2166242560 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -110,10 +110,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *2157551480
+  version_requirements: *2166242560
 - !ruby/object:Gem::Dependency
   name: progressbar
-  requirement: &2157550620 !ruby/object:Gem::Requirement
+  requirement: &2166241680 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -121,10 +121,10 @@ dependencies:
         version: 0.9.0
   type: :runtime
   prerelease: false
-  version_requirements: *2157550620
+  version_requirements: *2166241680
 - !ruby/object:Gem::Dependency
   name: rake
-  requirement: &2157566100 !ruby/object:Gem::Requirement
+  requirement: &2166257200 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - =
@@ -132,10 +132,10 @@ dependencies:
         version: 0.9.2.2
   type: :runtime
   prerelease: false
-  version_requirements: *2157566100
+  version_requirements: *2166257200
 - !ruby/object:Gem::Dependency
   name: json
-  requirement: &2157564540 !ruby/object:Gem::Requirement
+  requirement: &2166255420 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -143,10 +143,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *2157564540
+  version_requirements: *2166255420
 - !ruby/object:Gem::Dependency
   name: parallel
-  requirement: &2157561780 !ruby/object:Gem::Requirement
+  requirement: &2166252880 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -154,10 +154,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *2157561780
+  version_requirements: *2166252880
 - !ruby/object:Gem::Dependency
   name: shoulda
-  requirement: &2157574380 !ruby/object:Gem::Requirement
+  requirement: &2166375840 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -165,10 +165,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2157574380
+  version_requirements: *2166375840
 - !ruby/object:Gem::Dependency
   name: bundler
-  requirement: &2157572660 !ruby/object:Gem::Requirement
+  requirement: &2166373980 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -176,10 +176,10 @@ dependencies:
         version: 1.1.0
   type: :development
   prerelease: false
-  version_requirements: *2157572660
+  version_requirements: *2166373980
 - !ruby/object:Gem::Dependency
   name: jeweler
-  requirement: &2157571880 !ruby/object:Gem::Requirement
+  requirement: &2166373320 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -187,10 +187,10 @@ dependencies:
         version: 1.8.3
   type: :development
   prerelease: false
-  version_requirements: *2157571880
+  version_requirements: *2166373320
 - !ruby/object:Gem::Dependency
   name: rcov
-  requirement: &2157571380 !ruby/object:Gem::Requirement
+  requirement: &2166372800 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -198,10 +198,10 @@ dependencies:
         version: 0.9.11
   type: :development
   prerelease: false
-  version_requirements: *2157571380
+  version_requirements: *2166372800
 - !ruby/object:Gem::Dependency
   name: bio
-  requirement: &2157578140 !ruby/object:Gem::Requirement
+  requirement: &2166379100 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -209,10 +209,10 @@ dependencies:
         version: 1.4.2
   type: :development
   prerelease: false
-  version_requirements: *2157578140
+  version_requirements: *2166379100
 - !ruby/object:Gem::Dependency
   name: thor
-  requirement: &2157576920 !ruby/object:Gem::Requirement
+  requirement: &2166377460 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -220,10 +220,10 @@ dependencies:
         version: 0.14.6
   type: :development
   prerelease: false
-  version_requirements: *2157576920
+  version_requirements: *2166377460
 - !ruby/object:Gem::Dependency
   name: ffi
-  requirement: &2157590920 !ruby/object:Gem::Requirement
+  requirement: &2166391740 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -231,10 +231,10 @@ dependencies:
         version: 1.0.6
   type: :development
   prerelease: false
-  version_requirements: *2157590920
+  version_requirements: *2166391740
 - !ruby/object:Gem::Dependency
   name: rubyvis
-  requirement: &2157589180 !ruby/object:Gem::Requirement
+  requirement: &2166390020 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -242,10 +242,10 @@ dependencies:
         version: 0.5.0
   type: :development
   prerelease: false
-  version_requirements: *2157589180
+  version_requirements: *2166390020
 - !ruby/object:Gem::Dependency
   name: rspec
-  requirement: &2157587220 !ruby/object:Gem::Requirement
+  requirement: &2166388100 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -253,10 +253,10 @@ dependencies:
         version: 2.5.0
   type: :development
   prerelease: false
-  version_requirements: *2157587220
+  version_requirements: *2166388100
 - !ruby/object:Gem::Dependency
   name: daemons
-  requirement: &2157585680 !ruby/object:Gem::Requirement
+  requirement: &2166386680 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -264,10 +264,10 @@ dependencies:
         version: 1.1.0
   type: :development
   prerelease: false
-  version_requirements: *2157585680
+  version_requirements: *2166386680
 - !ruby/object:Gem::Dependency
   name: bio-samtools
-  requirement: &2157584920 !ruby/object:Gem::Requirement
+  requirement: &2166386000 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -275,10 +275,10 @@ dependencies:
         version: 0.3.2
   type: :development
   prerelease: false
-  version_requirements: *2157584920
+  version_requirements: *2166386000
 - !ruby/object:Gem::Dependency
   name: ruby-ensembl-api
-  requirement: &2157584240 !ruby/object:Gem::Requirement
+  requirement: &2166385360 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -286,10 +286,10 @@ dependencies:
         version: 1.0.1
   type: :development
   prerelease: false
-  version_requirements: *2157584240
+  version_requirements: *2166385360
 - !ruby/object:Gem::Dependency
   name: activerecord
-  requirement: &2157583260 !ruby/object:Gem::Requirement
+  requirement: &2166400500 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -297,10 +297,10 @@ dependencies:
         version: 3.0.5
   type: :development
   prerelease: false
-  version_requirements: *2157583260
+  version_requirements: *2166400500
 - !ruby/object:Gem::Dependency
   name: sqlite3
-  requirement: &2157598260 !ruby/object:Gem::Requirement
+  requirement: &2166399280 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -308,10 +308,10 @@ dependencies:
         version: 1.3.3
   type: :development
   prerelease: false
-  version_requirements: *2157598260
+  version_requirements: *2166399280
 - !ruby/object:Gem::Dependency
   name: bio-blastxmlparser
-  requirement: &2157597220 !ruby/object:Gem::Requirement
+  requirement: &2166397820 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -319,10 +319,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2157597220
+  version_requirements: *2166397820
 - !ruby/object:Gem::Dependency
   name: progressbar
-  requirement: &2157595700 !ruby/object:Gem::Requirement
+  requirement: &2166397040 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -330,10 +330,10 @@ dependencies:
         version: 0.9.0
   type: :development
   prerelease: false
-  version_requirements: *2157595700
+  version_requirements: *2166397040
 - !ruby/object:Gem::Dependency
   name: json
-  requirement: &2157595000 !ruby/object:Gem::Requirement
+  requirement: &2166396420 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -341,10 +341,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2157595000
+  version_requirements: *2166396420
 - !ruby/object:Gem::Dependency
   name: rake
-  requirement: &2157593700 !ruby/object:Gem::Requirement
+  requirement: &2166395200 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - =
@@ -352,10 +352,10 @@ dependencies:
         version: 0.9.2.2
   type: :development
   prerelease: false
-  version_requirements: *2157593700
+  version_requirements: *2166395200
 - !ruby/object:Gem::Dependency
   name: parallel
-  requirement: &2157592960 !ruby/object:Gem::Requirement
+  requirement: &2166394460 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -363,7 +363,7 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2157592960
+  version_requirements: *2166394460
 description: bio-ngs provides a framework for handling NGS data with BioRuby
 email: francesco.strozzi@gmail.com
 executables:
@@ -469,7 +469,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: 1893794030483247013
+      hash: -1654016565511947688
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: