bio-liftover 1.2.0 → 1.3.0

data/README.md

@@ -2,7 +2,9 @@
 
 [![Build Status](https://secure.travis-ci.org/andreirozanski/bioruby-liftover.png)](http://travis-ci.org/andreirozanski/bioruby-liftover)
 
-Full description goes here
+A Ruby solution for UCSC LiftOver tool.
+
+Suggestions and help from  Pjotr Prins.
 
 Note: this software is under active development!
 
@@ -23,20 +25,21 @@ require 'bio-liftover'
 
 As bin file:
 
-bio-liftover -h --help
+
 
 bio-liftover
 
 Usage:
-  bio-liftover.rb ([-v] -b <genome1> <genome2> <file>|[-v] -c <genome1> <genome2> <chromosome> <start> <end>)
-  bio-liftover.rb -h | --help
-  bio-liftover.rb -v | --verbose
+ bio-liftover ([-v] -c <genome1> <genome2> <chromosome> <start> <end>)
+ bio-liftover ([-v] -f <chain_file> -c <genome1> <genome2> <chromosome> <start> <end>)
+ bio-liftover -h | --help
+ bio-liftover -v | --verbose
 
 Options:
-  -h --help     Show this screen.
+  -h --help  Show this screen.
   -v --verbose  Increase information during run.
-  -b --bed      Bed file as input.
-  -c --coord    Coordinate as input i.e. hg19,hg18,chr2,55000.
+  -c --coord  Coordinate as input i.e. hg19,hg18,chr2,55000.
+  -f --file  Load local chain file.
 
 
 The API doc is online. For more code examples see the test files in

data/VERSION

@@ -1 +1 @@
-1.2.0
+1.3.0

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-liftover
 version: !ruby/object:Gem::Version
-  version: 1.2.0
+  version: 1.3.0
   prerelease: 
 platform: ruby
 authors:
@@ -175,7 +175,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: 4009182885935079557
+      hash: 2278430239368089374
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: