bio-grid 0.3.2 → 0.3.3

data/VERSION

@@ -1 +1 @@
-0.3.2
+0.3.3

data/bin/bio-grid

@@ -60,6 +60,9 @@ optparse = OptionParser.new do |opts|
 		options[:uuid] = uuid
 	end
 
+	opts.on("--path PATH1,PATH2 ...",Array,"Set the 'export PATH' directive") do |path|
+		options[:path] = path
+	end
 	opts.on("--keep-scripts","Keep all the running scripts created for all the jobs") {options[:keep] = true}
 
 	opts.on("-h","--help","Display this screen") do

data/bio-grid.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = "bio-grid"
-  s.version = "0.3.2"
+  s.version = "0.3.3"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Francesco Strozzi"]
-  s.date = "2012-10-12"
+  s.date = "2012-10-25"
   s.description = "A BioGem to submit jobs on a queue system"
   s.email = "francesco.strozzi@gmail.com"
   s.executables = ["bio-grid"]

data/lib/bio/grid/job.rb

@@ -41,7 +41,11 @@ module Bio
 				if self.options[:clean]
 					rm_type = (self.options[:output_folder]) ? "rm -fr" : "rm -f"
 					self.instructions << ("#{rm_type} #{self.job_output}*\n")
-				end	
+				end
+
+				if self.options[:path]
+					self.instructions.insert(2, "export PATH=$PATH:#{options[:path].join(':')}\n")
+				end
 			end
 
 			def write_runner(filename)

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-grid
 version: !ruby/object:Gem::Version
-  version: 0.3.2
+  version: 0.3.3
   prerelease: 
 platform: ruby
 authors:
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-10-12 00:00:00.000000000 Z
+date: 2012-10-25 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: uuid
@@ -146,7 +146,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: -3879853977881312685
+      hash: 1492901013232773549
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: