bio-grid 0.2.1 → 0.2.2

data/VERSION

@@ -1 +1 @@
-0.2.1
+0.2.2

data/bio-grid.gemspec

@@ -5,7 +5,7 @@
 
 Gem::Specification.new do |s|
   s.name = "bio-grid"
-  s.version = "0.2.1"
+  s.version = "0.2.2"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Francesco Strozzi"]

data/lib/bio/grid.rb

@@ -14,7 +14,6 @@ module Bio
 			groups = grid.prepare_input_groups
 			inputs = groups.keys.sort
 			groups[inputs.shift].each_with_index do |input1,index|
-				
 				if options[:cmd]=~/<(\d+),(\d+)(,\d+)*>/
 					step = ($3) ? $3.tr(",","").to_i : 1
 					range = Range.new($1.to_i,$2.to_i,false).step(step).to_a
@@ -37,7 +36,7 @@ module Bio
 			groups = Hash.new {|h,k| h[k] = [] }
 			self.input.each_with_index do |location,index|
 				if self.number == "all"
-					groups["input"] << Dir.glob(location).sort
+					groups["input#{index+1}"] = [Dir.glob(location).sort]
 				else
 					Dir.glob(location).sort.each_slice(self.number.to_i) {|subgroup| groups["input#{index+1}"] << subgroup}
 				end

data/lib/bio/grid/job.rb

@@ -14,6 +14,7 @@ module Bio
 
 			def set_commandline(cmd_line,inputs,input1,groups,index)	
 				commandline = cmd_line.gsub(/<input1>|<input>/,input1.join(self.options[:sep]))
+				p groups
 				inputs.each do |input|
 					commandline.gsub!(/<#{input}>/,groups[input][index].join(self.options[:sep]))
 				end
@@ -50,7 +51,6 @@ module Bio
 				out = File.open(Dir.pwd+"/"+filename,"w")
 				out.write(self.instructions+"\n")
 				out.close
-				p filename
 			end
 
 			def run(filename)

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-grid
 version: !ruby/object:Gem::Version
-  version: 0.2.1
+  version: 0.2.2
   prerelease: 
 platform: ruby
 authors:
@@ -114,7 +114,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: -3618052432547713784
+      hash: 1395497113467924292
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: