bio-gem 1.3.0 → 1.3.1

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Files changed (6) hide show
  1. data/Gemfile +1 -2
  2. data/Gemfile.lock +6 -7
  3. data/VERSION +1 -1
  4. data/bio-gem.gemspec +2 -8
  5. data/lib/bio-gem/mod/jeweler.rb +1 -1
  6. metadata +12 -34
data/Gemfile CHANGED
@@ -4,7 +4,7 @@ source "http://rubygems.org"
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  # gem "activesupport", ">= 2.3.5"
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  gem "bundler", "~> 1.0.18"
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  gem "jeweler", ">= 1.7.0"
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- gem "rdoc"
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+
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  # Add dependencies to develop your gem here.
@@ -13,5 +13,4 @@ group :development do
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  gem "shoulda", ">= 0"
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  gem "bundler", "~> 1.0.18"
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  gem "jeweler", ">= 1.7.0"
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- gem "rdoc"
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  end
data/Gemfile.lock CHANGED
@@ -2,16 +2,16 @@ GEM
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  remote: http://rubygems.org/
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  specs:
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  git (1.2.5)
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- jeweler (1.7.0)
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+ jeweler (1.8.3)
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  bundler (~> 1.0)
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  git (>= 1.2.5)
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  rake
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- rdoc
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- json (1.6.4)
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  rake (0.9.2.2)
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- rdoc (3.12)
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- json (~> 1.4)
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- shoulda (2.11.3)
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+ shoulda (3.0.1)
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+ shoulda-context (~> 1.0.0)
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+ shoulda-matchers (~> 1.0.0)
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+ shoulda-context (1.0.0)
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+ shoulda-matchers (1.0.0)
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  PLATFORMS
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  ruby
@@ -19,5 +19,4 @@ PLATFORMS
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  DEPENDENCIES
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  bundler (~> 1.0.18)
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  jeweler (>= 1.7.0)
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- rdoc
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  shoulda
data/VERSION CHANGED
@@ -1 +1 @@
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- 1.3.0
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+ 1.3.1
data/bio-gem.gemspec CHANGED
@@ -5,11 +5,11 @@
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  Gem::Specification.new do |s|
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  s.name = "bio-gem"
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- s.version = "1.3.0"
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+ s.version = "1.3.1"
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  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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  s.authors = ["Raoul J.P. Bonnal", "Pjotr Prins"]
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- s.date = "2012-02-28"
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+ s.date = "2012-03-03"
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  s.description = "Biogem is a software generator for those bioinformaticans who want to start coding an application or a library for using/extending BioRuby core library and sharing it through rubygems.org .\n The basic idea is to simplify and promote a modular approach to bioinformatics software development"
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  s.email = "ilpuccio.febo@gmail.com"
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  s.executables = ["biogem"]
@@ -79,28 +79,22 @@ Gem::Specification.new do |s|
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  if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
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  s.add_runtime_dependency(%q<bundler>, ["~> 1.0.18"])
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  s.add_runtime_dependency(%q<jeweler>, [">= 1.7.0"])
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- s.add_runtime_dependency(%q<rdoc>, [">= 0"])
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  s.add_development_dependency(%q<shoulda>, [">= 0"])
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  s.add_development_dependency(%q<bundler>, ["~> 1.0.18"])
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  s.add_development_dependency(%q<jeweler>, [">= 1.7.0"])
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- s.add_development_dependency(%q<rdoc>, [">= 0"])
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  else
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  s.add_dependency(%q<bundler>, ["~> 1.0.18"])
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  s.add_dependency(%q<jeweler>, [">= 1.7.0"])
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- s.add_dependency(%q<rdoc>, [">= 0"])
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  s.add_dependency(%q<shoulda>, [">= 0"])
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  s.add_dependency(%q<bundler>, ["~> 1.0.18"])
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  s.add_dependency(%q<jeweler>, [">= 1.7.0"])
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- s.add_dependency(%q<rdoc>, [">= 0"])
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  end
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  else
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  s.add_dependency(%q<bundler>, ["~> 1.0.18"])
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  s.add_dependency(%q<jeweler>, [">= 1.7.0"])
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- s.add_dependency(%q<rdoc>, [">= 0"])
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  s.add_dependency(%q<shoulda>, [">= 0"])
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  s.add_dependency(%q<bundler>, ["~> 1.0.18"])
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  s.add_dependency(%q<jeweler>, [">= 1.7.0"])
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- s.add_dependency(%q<rdoc>, [">= 0"])
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  end
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  end
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data/lib/bio-gem/mod/jeweler.rb CHANGED
@@ -22,7 +22,7 @@ class Jeweler
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  # development_dependencies << ["bio-logger"]
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  development_dependencies << ["bio", ">= 1.4.2"]
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  # we add rdoc because of an upgrade of rake RDocTask causing errors
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- development_dependencies << ["rdoc", ">= 2.4.2"]
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+ development_dependencies << ["rdoc","~> 3.12"]
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  if options[:biogem_db]
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  development_dependencies << ["activerecord", ">= 3.0.7"]
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  development_dependencies << ["activesupport", ">= 3.0.7"]
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: bio-gem
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  version: !ruby/object:Gem::Version
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- version: 1.3.0
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+ version: 1.3.1
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  prerelease:
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  platform: ruby
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  authors:
@@ -10,11 +10,11 @@ authors:
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2012-02-28 00:00:00.000000000 Z
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+ date: 2012-03-03 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: bundler
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- requirement: &2152477800 !ruby/object:Gem::Requirement
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+ requirement: &2169129020 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -22,10 +22,10 @@ dependencies:
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  version: 1.0.18
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  type: :runtime
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  prerelease: false
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- version_requirements: *2152477800
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+ version_requirements: *2169129020
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  - !ruby/object:Gem::Dependency
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  name: jeweler
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- requirement: &2152476940 !ruby/object:Gem::Requirement
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+ requirement: &2169125980 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -33,21 +33,10 @@ dependencies:
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  version: 1.7.0
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  type: :runtime
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  prerelease: false
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- version_requirements: *2152476940
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- - !ruby/object:Gem::Dependency
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- name: rdoc
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- requirement: &2152476160 !ruby/object:Gem::Requirement
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- none: false
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- requirements:
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- - - ! '>='
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- - !ruby/object:Gem::Version
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- version: '0'
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- type: :runtime
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- prerelease: false
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- version_requirements: *2152476160
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+ version_requirements: *2169125980
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  - !ruby/object:Gem::Dependency
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  name: shoulda
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- requirement: &2152490840 !ruby/object:Gem::Requirement
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+ requirement: &2169124020 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -55,10 +44,10 @@ dependencies:
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *2152490840
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+ version_requirements: *2169124020
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  - !ruby/object:Gem::Dependency
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  name: bundler
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- requirement: &2152488740 !ruby/object:Gem::Requirement
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+ requirement: &2169121720 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -66,10 +55,10 @@ dependencies:
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  version: 1.0.18
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  type: :development
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  prerelease: false
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- version_requirements: *2152488740
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+ version_requirements: *2169121720
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  - !ruby/object:Gem::Dependency
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  name: jeweler
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- requirement: &2152486560 !ruby/object:Gem::Requirement
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+ requirement: &2169136360 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -77,18 +66,7 @@ dependencies:
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  version: 1.7.0
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  type: :development
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  prerelease: false
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- version_requirements: *2152486560
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- - !ruby/object:Gem::Dependency
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- name: rdoc
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- requirement: &2152485000 !ruby/object:Gem::Requirement
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- none: false
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- requirements:
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- - - ! '>='
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- - !ruby/object:Gem::Version
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- version: '0'
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- type: :development
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- prerelease: false
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- version_requirements: *2152485000
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+ version_requirements: *2169136360
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  description: ! "Biogem is a software generator for those bioinformaticans who want
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  to start coding an application or a library for using/extending BioRuby core library
94
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  and sharing it through rubygems.org .\n The basic idea is to simplify and promote