bio-gem 0.3.1 → 0.3.2

data/Gemfile

@@ -2,12 +2,15 @@ source "http://rubygems.org"
 # Add dependencies required to use your gem here.
 # Example:
 #   gem "activesupport", ">= 2.3.5"
+gem "bundler", "~> 1.0.18"
+gem "jeweler", "~> 1.6.4"
+
 
 # Add dependencies to develop your gem here.
 # Include everything needed to run rake, tests, features, etc.
 group :development do
   gem "shoulda", ">= 0"
-  gem "bundler", "~> 1.0.0"
-  gem "jeweler", "~> 1.5.1"
+  gem "bundler", "~> 1.0.18"
+  gem "jeweler", "~> 1.6.4"
   gem "rcov", ">= 0"
 end

data/Gemfile.lock

@@ -2,19 +2,19 @@ GEM
   remote: http://rubygems.org/
   specs:
     git (1.2.5)
-    jeweler (1.5.2)
-      bundler (~> 1.0.0)
+    jeweler (1.6.4)
+      bundler (~> 1.0)
       git (>= 1.2.5)
       rake
     rake (0.9.2)
-    rcov (0.9.9)
+    rcov (0.9.10)
     shoulda (2.11.3)
 
 PLATFORMS
   ruby
 
 DEPENDENCIES
-  bundler (~> 1.0.0)
-  jeweler (~> 1.5.1)
+  bundler (~> 1.0.18)
+  jeweler (~> 1.6.4)
   rcov
   shoulda

data/Rakefile

@@ -22,8 +22,6 @@ Jeweler::Tasks.new do |gem|
   gem.authors = ["Raoul J.P. Bonnal"]
   # Include your dependencies below. Runtime dependencies are required when using your gem,
   # and development dependencies are only needed for development (ie running rake tasks, tests, etc)
-  #  gem.add_runtime_dependency 'jabber4r', '> 0.1'
-  #  gem.add_development_dependency 'rspec', '> 1.2.3'
   #gem.version='0.0.1'
 end
 Jeweler::RubygemsDotOrgTasks.new
@@ -44,7 +42,7 @@ end
 
 task :default => :test
 
-require 'rake/rdoctask'
+require 'rdoc/task'
 Rake::RDocTask.new do |rdoc|
   version = File.exist?('VERSION') ? File.read('VERSION') : ""
 

data/VERSION

@@ -1 +1 @@
-0.3.1
+0.3.2

data/bio-gem.gemspec

@@ -5,16 +5,15 @@
 
 Gem::Specification.new do |s|
   s.name = %q{bio-gem}
-  s.version = "0.3.1"
+  s.version = "0.3.2"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
-  s.authors = ["Raoul J.P. Bonnal"]
-  s.date = %q{2011-08-16}
-  s.default_executable = %q{biogem}
+  s.authors = [%q{Raoul J.P. Bonnal}]
+  s.date = %q{2011-09-23}
   s.description = %q{BioGem is a scaffold generator for those Bioinformaticans who want to start coding an application or a library for using/extending BioRuby core library and sharing it through rubygems.org .
   The basic idea is to simplify and promote a modular approach to the BioRuby package.}
   s.email = %q{ilpuccio.febo@gmail.com}
-  s.executables = ["biogem"]
+  s.executables = [%q{biogem}]
   s.extra_rdoc_files = [
     "LICENSE.txt",
     "README.rdoc"
@@ -44,33 +43,35 @@ Gem::Specification.new do |s|
     "test/test_bio-gem.rb"
   ]
   s.homepage = %q{http://github.com/helios/bioruby-gem}
-  s.licenses = ["MIT"]
-  s.require_paths = ["lib"]
-  s.rubygems_version = %q{1.5.0}
+  s.licenses = [%q{MIT}]
+  s.require_paths = [%q{lib}]
+  s.rubygems_version = %q{1.8.6}
   s.summary = %q{BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package}
-  s.test_files = [
-    "test/helper.rb",
-    "test/test_bio-gem.rb"
-  ]
 
   if s.respond_to? :specification_version then
     s.specification_version = 3
 
     if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
+      s.add_runtime_dependency(%q<bundler>, ["~> 1.0.18"])
+      s.add_runtime_dependency(%q<jeweler>, ["~> 1.6.4"])
       s.add_development_dependency(%q<shoulda>, [">= 0"])
-      s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
-      s.add_development_dependency(%q<jeweler>, ["~> 1.5.1"])
+      s.add_development_dependency(%q<bundler>, ["~> 1.0.18"])
+      s.add_development_dependency(%q<jeweler>, ["~> 1.6.4"])
       s.add_development_dependency(%q<rcov>, [">= 0"])
     else
+      s.add_dependency(%q<bundler>, ["~> 1.0.18"])
+      s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
       s.add_dependency(%q<shoulda>, [">= 0"])
-      s.add_dependency(%q<bundler>, ["~> 1.0.0"])
-      s.add_dependency(%q<jeweler>, ["~> 1.5.1"])
+      s.add_dependency(%q<bundler>, ["~> 1.0.18"])
+      s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
       s.add_dependency(%q<rcov>, [">= 0"])
     end
   else
+    s.add_dependency(%q<bundler>, ["~> 1.0.18"])
+    s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
     s.add_dependency(%q<shoulda>, [">= 0"])
-    s.add_dependency(%q<bundler>, ["~> 1.0.0"])
-    s.add_dependency(%q<jeweler>, ["~> 1.5.1"])
+    s.add_dependency(%q<bundler>, ["~> 1.0.18"])
+    s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
     s.add_dependency(%q<rcov>, [">= 0"])
   end
 end

metadata

@@ -1,74 +1,94 @@
---- !ruby/object:Gem::Specification 
+--- !ruby/object:Gem::Specification
 name: bio-gem
-version: !ruby/object:Gem::Version 
+version: !ruby/object:Gem::Version
+  version: 0.3.2
   prerelease: 
-  version: 0.3.1
 platform: ruby
-authors: 
+authors:
 - Raoul J.P. Bonnal
 autorequire: 
 bindir: bin
 cert_chain: []
-
-date: 2011-08-16 00:00:00 +02:00
-default_executable: biogem
-dependencies: 
-- !ruby/object:Gem::Dependency 
+date: 2011-09-23 00:00:00.000000000Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: &2169062040 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: 1.0.18
+  type: :runtime
+  prerelease: false
+  version_requirements: *2169062040
+- !ruby/object:Gem::Dependency
+  name: jeweler
+  requirement: &2169060060 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: 1.6.4
+  type: :runtime
+  prerelease: false
+  version_requirements: *2169060060
+- !ruby/object:Gem::Dependency
   name: shoulda
-  requirement: &id001 !ruby/object:Gem::Requirement 
+  requirement: &2169058620 !ruby/object:Gem::Requirement
     none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
-        version: "0"
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
   type: :development
   prerelease: false
-  version_requirements: *id001
-- !ruby/object:Gem::Dependency 
+  version_requirements: *2169058620
+- !ruby/object:Gem::Dependency
   name: bundler
-  requirement: &id002 !ruby/object:Gem::Requirement 
+  requirement: &2169057460 !ruby/object:Gem::Requirement
     none: false
-    requirements: 
+    requirements:
     - - ~>
-      - !ruby/object:Gem::Version 
-        version: 1.0.0
+      - !ruby/object:Gem::Version
+        version: 1.0.18
   type: :development
   prerelease: false
-  version_requirements: *id002
-- !ruby/object:Gem::Dependency 
+  version_requirements: *2169057460
+- !ruby/object:Gem::Dependency
   name: jeweler
-  requirement: &id003 !ruby/object:Gem::Requirement 
+  requirement: &2169056280 !ruby/object:Gem::Requirement
     none: false
-    requirements: 
+    requirements:
     - - ~>
-      - !ruby/object:Gem::Version 
-        version: 1.5.1
+      - !ruby/object:Gem::Version
+        version: 1.6.4
   type: :development
   prerelease: false
-  version_requirements: *id003
-- !ruby/object:Gem::Dependency 
+  version_requirements: *2169056280
+- !ruby/object:Gem::Dependency
   name: rcov
-  requirement: &id004 !ruby/object:Gem::Requirement 
+  requirement: &2169052780 !ruby/object:Gem::Requirement
     none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
-        version: "0"
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
   type: :development
   prerelease: false
-  version_requirements: *id004
-description: |-
-  BioGem is a scaffold generator for those Bioinformaticans who want to start coding an application or a library for using/extending BioRuby core library and sharing it through rubygems.org .
-    The basic idea is to simplify and promote a modular approach to the BioRuby package.
+  version_requirements: *2169052780
+description: ! "BioGem is a scaffold generator for those Bioinformaticans who want
+  to start coding an application or a library for using/extending BioRuby core library
+  and sharing it through rubygems.org .\n  The basic idea is to simplify and promote
+  a modular approach to the BioRuby package."
 email: ilpuccio.febo@gmail.com
-executables: 
+executables:
 - biogem
 extensions: []
-
-extra_rdoc_files: 
+extra_rdoc_files:
 - LICENSE.txt
 - README.rdoc
-files: 
+files:
 - .document
 - Gemfile
 - Gemfile.lock
@@ -91,37 +111,33 @@ files:
 - lib/bio-gem/templates/seeds
 - test/helper.rb
 - test/test_bio-gem.rb
-has_rdoc: true
 homepage: http://github.com/helios/bioruby-gem
-licenses: 
+licenses:
 - MIT
 post_install_message: 
 rdoc_options: []
-
-require_paths: 
+require_paths:
 - lib
-required_ruby_version: !ruby/object:Gem::Requirement 
+required_ruby_version: !ruby/object:Gem::Requirement
   none: false
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      hash: -264589067735588333
-      segments: 
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+      segments:
       - 0
-      version: "0"
-required_rubygems_version: !ruby/object:Gem::Requirement 
+      hash: 2559316480446829434
+required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      version: "0"
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
 requirements: []
-
 rubyforge_project: 
-rubygems_version: 1.5.0
+rubygems_version: 1.8.6
 signing_key: 
 specification_version: 3
-summary: BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package
-test_files: 
-- test/helper.rb
-- test/test_bio-gem.rb
+summary: BioGem helps Bioinformaticians start developing plugins/modules for BioRuby
+  creating a scaffold and a gem package
+test_files: []