bio-gadget 0.4.2 → 0.4.3

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 27884e24ae8337cdb9a1f93c1baf1e1b8c19c5af
-  data.tar.gz: 7b0ee4c467ba98d3564014f8786c197d9e81756f
+  metadata.gz: 6d522f56661028dc81bf2c51cf949e41a310b187
+  data.tar.gz: a9fbb56f5eb610b46a138353dc3ed8f9648cd2ea
 SHA512:
-  metadata.gz: badbe0d6f1f09e5005b5bc29b1d94c35f115d1286050d99de3caf18bd3222b3ca497ac0a632448dea5eb931fd8951bfc08f0e77cf9d4b275d0cf04701bd3900c
-  data.tar.gz: 86c0c9b27fa747f27091a7d1ca994e36d9f5393e690912b51cbcb8612daf9c26bc76a70de069d02c6403dc2152701b861287350fa19e21fdd2d019356521307b
+  metadata.gz: 407c03f7f3625b29f6eebf38bb3bf5457a3ef416c1a99b45e16401229ff71d553f97e34b56d84c11fa9ee698cf7bb7bb90657882303b6e2973a32c3abb362168
+  data.tar.gz: eae976bb606a74d1d161b4683d4fcef90c4ae549dcaccfdc07b32767bed98ce833cf4e2b6b8a3278c09d36c44156f7fb09e3354895bac298bb575466d65098d8

data/lib/bio-gadget/demlt.rb

@@ -134,10 +134,9 @@ FORMAT
           preprocess += '| ruby -e \'require "bio-faster";Bio::Faster.new(:stdin).each_record(:quality=>:raw){|v|s=v[1].gsub(/^G+/,"");l=v[1].length-s.length;puts("@#{v[0]}|-G#{l}\\n#{s}\\n+\\n#{v[2][l,s.length]}") if s.length>0}\'' if gtrim
 
           if qtrim != '~' || mlen > 0
-            preprocess += '| ruby -e \'require "bio-faster";Bio::Faster.new(:stdin).each_record(:quality=>:raw){|v|m=v[2].length-1;0.upto(m){|i|if v[2][i]<"'+qtrim+'" then m=i-1;break;end};puts("@#{v[0]}\n#{v[1][0..m]}\n+\n#{v[2][0..m]}") if m>'+mlen.to_s+'}\''
+            preprocess += '| ruby -e \'require "bio-faster";Bio::Faster.new(:stdin).each_record(:quality=>:raw){|v|m=v[2].length-1;0.upto(m){|i|if v[2][i]<"'+qtrim+'" then m=i-1;break;end};puts("@#{v[0]}\n#{v[1][0..m]}\n+\n#{v[2][0..m]}") if m+1>='+mlen.to_s+'}\''
           end
 
-          puts preprocess
           exec preprocess+"| xz -z -c -e > #{outpath}"
         }
       }

data/lib/bio-gadget/version.rb

@@ -3,7 +3,7 @@ require 'thor'
 module Bio
   class Gadget < Thor
 
-    VERSION = "0.4.2"
+    VERSION = "0.4.3"
 
   end
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: bio-gadget
 version: !ruby/object:Gem::Version
-  version: 0.4.2
+  version: 0.4.3
 platform: ruby
 authors:
 - Shintaro Katayama
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-04-12 00:00:00.000000000 Z
+date: 2013-04-14 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: thor