bio-gadget 0.4.2 → 0.4.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/bio-gadget/demlt.rb +1 -2
- data/lib/bio-gadget/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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data.tar.gz:
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metadata.gz: 6d522f56661028dc81bf2c51cf949e41a310b187
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4
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data.tar.gz: a9fbb56f5eb610b46a138353dc3ed8f9648cd2ea
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 407c03f7f3625b29f6eebf38bb3bf5457a3ef416c1a99b45e16401229ff71d553f97e34b56d84c11fa9ee698cf7bb7bb90657882303b6e2973a32c3abb362168
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7
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data.tar.gz: eae976bb606a74d1d161b4683d4fcef90c4ae549dcaccfdc07b32767bed98ce833cf4e2b6b8a3278c09d36c44156f7fb09e3354895bac298bb575466d65098d8
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data/lib/bio-gadget/demlt.rb
CHANGED
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@@ -134,10 +134,9 @@ FORMAT
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preprocess += '| ruby -e \'require "bio-faster";Bio::Faster.new(:stdin).each_record(:quality=>:raw){|v|s=v[1].gsub(/^G+/,"");l=v[1].length-s.length;puts("@#{v[0]}|-G#{l}\\n#{s}\\n+\\n#{v[2][l,s.length]}") if s.length>0}\'' if gtrim
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if qtrim != '~' || mlen > 0
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-
preprocess += '| ruby -e \'require "bio-faster";Bio::Faster.new(:stdin).each_record(:quality=>:raw){|v|m=v[2].length-1;0.upto(m){|i|if v[2][i]<"'+qtrim+'" then m=i-1;break;end};puts("@#{v[0]}\n#{v[1][0..m]}\n+\n#{v[2][0..m]}") if m
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preprocess += '| ruby -e \'require "bio-faster";Bio::Faster.new(:stdin).each_record(:quality=>:raw){|v|m=v[2].length-1;0.upto(m){|i|if v[2][i]<"'+qtrim+'" then m=i-1;break;end};puts("@#{v[0]}\n#{v[1][0..m]}\n+\n#{v[2][0..m]}") if m+1>='+mlen.to_s+'}\''
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end
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-
puts preprocess
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exec preprocess+"| xz -z -c -e > #{outpath}"
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}
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}
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data/lib/bio-gadget/version.rb
CHANGED
metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: bio-gadget
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version: !ruby/object:Gem::Version
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-
version: 0.4.
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version: 0.4.3
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platform: ruby
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authors:
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- Shintaro Katayama
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2013-04-
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date: 2013-04-14 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: thor
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