bio-gadget 0.2.1 → 0.2.2

data/lib/bio-gadget/demlt.rb

@@ -32,7 +32,7 @@ module Bio
       ts = Array.new
       qs = Array.new
       (wells + ['other']).each { |well|
-        q = SizedQueue.new(100000)
+        q = SizedQueue.new(1000)
         t = Thread.new(well, q) do |well, q|
           tc = Thread.current
           tc[:file] = "#{options['output-dir']}/#{well}.fq.xz"
@@ -52,7 +52,7 @@ module Bio
         ts.push(t)
       }
 
-      rq = Queue.new
+      rq = SizedQueue.new(1000)
       Thread.new(rq) {
         Bio::Faster.new(:stdin).each_record(:quality => :raw) do |seqid, seq, qvs|
           rq.push([seqid, seq, qvs])
@@ -65,7 +65,7 @@ module Bio
         if vals != ""
           seqs.push(vals)
         end
-        if vals == "" || seqs.size == 100000 * Parallel.processor_count
+        if vals == "" || seqs.size == 10000 * Parallel.processor_count
           parallel_Levenshtein(seqs, bcs, ofs, bclen, qs)
           seqs = Array.new
         end

data/lib/bio-gadget/version.rb

@@ -3,7 +3,7 @@ require 'thor'
 module Bio
   class Gadget < Thor
 
-    VERSION = "0.2.1"
+    VERSION = "0.2.2"
 
   end
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-gadget
 version: !ruby/object:Gem::Version
-  version: 0.2.1
+  version: 0.2.2
   prerelease: 
 platform: ruby
 authors:
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-12-09 00:00:00.000000000 Z
+date: 2012-12-13 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: gthor