bio-fastqc 0.3.1 → 0.4.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 7e21d6a0e0f6ec91c058b8a574e79e6fa9dad431
-  data.tar.gz: 93ed09413b3fdb49564c43e68a49bed3d1937d88
+  metadata.gz: f33c80f37ab9c976d1cdfd3e12735bcc1c6216a0
+  data.tar.gz: 1e72aa79ffbbe2e8622434b3f81333e4c222066b
 SHA512:
-  metadata.gz: 48097e944bd5c7e76a804f7d0623f869dddb17fceb4da878878489f2ad745dab9b0c925cadccce12bee332ff3b3c8db5dea1ce22085acf1be914bddec2f04998
-  data.tar.gz: fc4ac83bb59b47e5bf554884efbdc7e7f179fece8bd94fa70529fe7858727cdf6826ec87ac6081c68d91c3c82f0c908ab46a8798f9b180d9974839aa02daa77c
+  metadata.gz: 1c6b23deab46efbe45a64beef5575127e1edcbaae9903b30d9d7b795b3d0151ec9d11ed14bcd2dc66b31127e9f5a3abaf7ba6c843b46a4bfd86a9446d735412f
+  data.tar.gz: 5bd1f534bb2dc492ca6d98b3d4b6f614e75cafb72c69f1b917acb4284087d456dc776eb6b944a8707c5f6f9401412a4b5903cdd8a4673dfb31ccb7fcad3617ec

data/VERSION

@@ -1 +1 @@
-0.3.1
+0.4.0

data/lib/bio/fastqc/converter.rb

@@ -3,7 +3,8 @@
 module Bio
   module FastQC
     class Converter
-      def initialize(summary_json)
+      def initialize(summary_json, id: nil)
+        @id = id
         @summary_json = summary_json
       end
 
@@ -19,16 +20,25 @@ module Bio
       end
 
       def to_json
-        JSON.dump(@summary_json)
+        json = if @id
+                 { @id => @summary_json }
+               else
+                 @summary_json
+               end
+        JSON.dump(json)
       end
 
       def to_jsonld
-        json_ld_object = Semantics.new(@summary_json).json_ld_object
+        json_ld_object = Semantics.new(@summary_json, id: @id).json_ld_object
         JSON.dump(json_ld_object)
       end
 
       def to_turtle
-        Semantics.new(@summary_json).turtle
+        Semantics.new(@summary_json, id: @id).turtle
+      end
+
+      def to_ttl
+        to_turtle
       end
     end
   end

data/lib/bio/fastqc/semantics.rb

@@ -6,7 +6,8 @@ require 'rdf/turtle'
 module Bio
   module FastQC
     class Semantics
-      def initialize(summary_json)
+      def initialize(summary_json, id: nil)
+        @id = id
         @summary = summary_json
       end
 
@@ -30,7 +31,11 @@ module Bio
       end
 
       def identifier
-        "http://me.com/data/QNT" + @summary[:filename].split(".").first
+        if @id
+          @id
+        else
+          "http://me.com/data/QNT" + @summary[:filename].split(".").first
+        end
       end
 
       def object_core

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-fastqc
 version: !ruby/object:Gem::Version
-  version: 0.3.1
+  version: 0.4.0
 platform: ruby
 authors:
 - Tazro Inutano Ohta