bio-fastqc 0.3.1 → 0.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/lib/bio/fastqc/converter.rb +14 -4
- data/lib/bio/fastqc/semantics.rb +7 -2
- metadata +1 -1
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: f33c80f37ab9c976d1cdfd3e12735bcc1c6216a0
|
|
4
|
+
data.tar.gz: 1e72aa79ffbbe2e8622434b3f81333e4c222066b
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 1c6b23deab46efbe45a64beef5575127e1edcbaae9903b30d9d7b795b3d0151ec9d11ed14bcd2dc66b31127e9f5a3abaf7ba6c843b46a4bfd86a9446d735412f
|
|
7
|
+
data.tar.gz: 5bd1f534bb2dc492ca6d98b3d4b6f614e75cafb72c69f1b917acb4284087d456dc776eb6b944a8707c5f6f9401412a4b5903cdd8a4673dfb31ccb7fcad3617ec
|
data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
0.
|
|
1
|
+
0.4.0
|
data/lib/bio/fastqc/converter.rb
CHANGED
|
@@ -3,7 +3,8 @@
|
|
|
3
3
|
module Bio
|
|
4
4
|
module FastQC
|
|
5
5
|
class Converter
|
|
6
|
-
def initialize(summary_json)
|
|
6
|
+
def initialize(summary_json, id: nil)
|
|
7
|
+
@id = id
|
|
7
8
|
@summary_json = summary_json
|
|
8
9
|
end
|
|
9
10
|
|
|
@@ -19,16 +20,25 @@ module Bio
|
|
|
19
20
|
end
|
|
20
21
|
|
|
21
22
|
def to_json
|
|
22
|
-
|
|
23
|
+
json = if @id
|
|
24
|
+
{ @id => @summary_json }
|
|
25
|
+
else
|
|
26
|
+
@summary_json
|
|
27
|
+
end
|
|
28
|
+
JSON.dump(json)
|
|
23
29
|
end
|
|
24
30
|
|
|
25
31
|
def to_jsonld
|
|
26
|
-
json_ld_object = Semantics.new(@summary_json).json_ld_object
|
|
32
|
+
json_ld_object = Semantics.new(@summary_json, id: @id).json_ld_object
|
|
27
33
|
JSON.dump(json_ld_object)
|
|
28
34
|
end
|
|
29
35
|
|
|
30
36
|
def to_turtle
|
|
31
|
-
Semantics.new(@summary_json).turtle
|
|
37
|
+
Semantics.new(@summary_json, id: @id).turtle
|
|
38
|
+
end
|
|
39
|
+
|
|
40
|
+
def to_ttl
|
|
41
|
+
to_turtle
|
|
32
42
|
end
|
|
33
43
|
end
|
|
34
44
|
end
|
data/lib/bio/fastqc/semantics.rb
CHANGED
|
@@ -6,7 +6,8 @@ require 'rdf/turtle'
|
|
|
6
6
|
module Bio
|
|
7
7
|
module FastQC
|
|
8
8
|
class Semantics
|
|
9
|
-
def initialize(summary_json)
|
|
9
|
+
def initialize(summary_json, id: nil)
|
|
10
|
+
@id = id
|
|
10
11
|
@summary = summary_json
|
|
11
12
|
end
|
|
12
13
|
|
|
@@ -30,7 +31,11 @@ module Bio
|
|
|
30
31
|
end
|
|
31
32
|
|
|
32
33
|
def identifier
|
|
33
|
-
|
|
34
|
+
if @id
|
|
35
|
+
@id
|
|
36
|
+
else
|
|
37
|
+
"http://me.com/data/QNT" + @summary[:filename].split(".").first
|
|
38
|
+
end
|
|
34
39
|
end
|
|
35
40
|
|
|
36
41
|
def object_core
|