bio-fasta_retrieve 0.0.2 → 0.0.3
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- checksums.yaml +4 -4
- data/lib/bio-fasta_retrieve.rb +7 -0
- metadata +50 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: afb8c13b52d8d972d9c814dcd690bcfe9efe0834
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4
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data.tar.gz: 4e4a31ea716063da87c935db12dfec8ef095a348
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: b5355bb51ac9c7df882b6f49c28ee184be6757e6ffdd2fbb6bcee94d7c180a422e2cd8c0f8e0d64f94e74ecbec6d8da07548732b22a6cf2ca819945d44d1abdd
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7
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+
data.tar.gz: e71d64d5a38f81ae4a4004506bb1ce37bed1972e53bb25f246b946449dfbb1a37e731541353a00f9e7c324ca59ed8d679f09e0cd0e4dc63d6847f5a69126600b
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data/lib/bio-fasta_retrieve.rb
CHANGED
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@@ -8,6 +8,13 @@
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8
8
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module FastaRetriever
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9
9
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class Retriever
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10
10
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11
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+
# Example:
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12
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# >> Retriever.retrieve("hg19","chr1","1000","2000")
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#
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14
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# Arguments:
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15
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# language: (String)
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#
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17
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require 'bio' # For creation of fasta object.
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12
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require 'nokogiri' # For sequence retrieve and parse.
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13
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require 'open-uri' # For sequence retrieve.
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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name: bio-fasta_retrieve
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.0.
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4
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+
version: 0.0.3
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5
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platform: ruby
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6
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authors:
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7
7
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- Andrei Rozanski
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@@ -9,7 +9,55 @@ autorequire:
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9
9
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bindir: bin
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10
10
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cert_chain: []
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11
11
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date: 2015-08-13 00:00:00.000000000 Z
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12
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-
dependencies:
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12
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+
dependencies:
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13
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- !ruby/object:Gem::Dependency
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14
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name: bio
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15
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requirement: !ruby/object:Gem::Requirement
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requirements:
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17
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- - "~>"
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18
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- !ruby/object:Gem::Version
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19
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version: '1.5'
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type: :runtime
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prerelease: false
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+
version_requirements: !ruby/object:Gem::Requirement
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requirements:
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24
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- - "~>"
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25
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- !ruby/object:Gem::Version
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26
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version: '1.5'
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27
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+
- !ruby/object:Gem::Dependency
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28
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name: nokogiri
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29
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requirement: !ruby/object:Gem::Requirement
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requirements:
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31
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+
- - "~>"
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32
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+
- !ruby/object:Gem::Version
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33
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version: '1.6'
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34
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- - ">="
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35
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- !ruby/object:Gem::Version
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version: 1.6.6.2
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type: :runtime
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38
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prerelease: false
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39
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version_requirements: !ruby/object:Gem::Requirement
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40
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requirements:
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41
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- - "~>"
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42
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- !ruby/object:Gem::Version
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43
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version: '1.6'
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44
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- - ">="
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45
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- !ruby/object:Gem::Version
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46
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version: 1.6.6.2
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47
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- !ruby/object:Gem::Dependency
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48
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name: open-uri
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49
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requirement: !ruby/object:Gem::Requirement
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50
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requirements:
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51
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+
- - "~>"
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52
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- !ruby/object:Gem::Version
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53
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version: '0.1'
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54
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type: :runtime
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55
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prerelease: false
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56
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version_requirements: !ruby/object:Gem::Requirement
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57
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requirements:
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58
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- - "~>"
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59
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- !ruby/object:Gem::Version
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60
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version: '0.1'
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13
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description: Gem that helps to retrieve DNA sequence from UCSC
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14
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email: rozanski.andrei@gmail.com
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15
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executables: []
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