bio-blast_seq_extract 0.2.4 → 0.2.5
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- checksums.yaml +4 -4
- data/README.md +4 -0
- data/lib/bio/blast_seq_extract/version.rb +1 -1
- metadata +2 -2
checksums.yaml
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 4938419cba8dc44360d1bc30713c632b211d9d07c67ccd80fd64f3008a7a9595
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data.tar.gz: c91313b6e9ab0b9fa53406097391583ff7df46719c074cb743e38db90fc60e23
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 8f7fc6ff7a72005942bfbe3bc8e22ff1fb221bb38da614ed037a47a2f31002173c287665203d72198836e727545c3b83226369ad1a56da4d50e5dfe3cf51cc15
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data.tar.gz: 492930b06cff61acf5cb7e2b4a4f32eb32dbba0a801835f5a0ab026c2fd0cd6b7468cd53f446121b7ec732703afb56443f8deeb3ee8c344a9715969784085cf9
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data/README.md
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@@ -26,15 +26,19 @@ Or install it yourself as:
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a = BlastSeqExtract.new
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Read a sequence in the format of fasta
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a.readSeq(seq_infile)
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Read the blast output (tabular format)
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a.readBlast(blast_infile, evalue_cutoff, max_no_seqs)
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Get the aligned region from the blast output
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seqObjs = a.getRegion
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Assumming the input is in FASTA format, f is an object of Bio::FastaFormat
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seqObjs.each do |f|
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puts '>'+f.definition
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puts f.seq
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metadata
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--- !ruby/object:Gem::Specification
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name: bio-blast_seq_extract
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version: !ruby/object:Gem::Version
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version: 0.2.
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version: 0.2.5
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platform: ruby
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authors:
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- Sishuo Wang
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autorequire:
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bindir: exe
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cert_chain: []
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date: 2019-12-
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date: 2019-12-20 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio
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