bio-blast_seq_extract 0.2.4 → 0.2.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +4 -0
- data/lib/bio/blast_seq_extract/version.rb +1 -1
- metadata +2 -2
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 4938419cba8dc44360d1bc30713c632b211d9d07c67ccd80fd64f3008a7a9595
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data.tar.gz: c91313b6e9ab0b9fa53406097391583ff7df46719c074cb743e38db90fc60e23
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SHA512:
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metadata.gz:
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metadata.gz: 8f7fc6ff7a72005942bfbe3bc8e22ff1fb221bb38da614ed037a47a2f31002173c287665203d72198836e727545c3b83226369ad1a56da4d50e5dfe3cf51cc15
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data.tar.gz: 492930b06cff61acf5cb7e2b4a4f32eb32dbba0a801835f5a0ab026c2fd0cd6b7468cd53f446121b7ec732703afb56443f8deeb3ee8c344a9715969784085cf9
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data/README.md
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@@ -26,15 +26,19 @@ Or install it yourself as:
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a = BlastSeqExtract.new
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Read a sequence in the format of fasta
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a.readSeq(seq_infile)
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Read the blast output (tabular format)
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a.readBlast(blast_infile, evalue_cutoff, max_no_seqs)
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Get the aligned region from the blast output
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seqObjs = a.getRegion
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Assumming the input is in FASTA format, f is an object of Bio::FastaFormat
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seqObjs.each do |f|
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puts '>'+f.definition
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puts f.seq
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metadata
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--- !ruby/object:Gem::Specification
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name: bio-blast_seq_extract
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version: !ruby/object:Gem::Version
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version: 0.2.
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version: 0.2.5
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platform: ruby
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authors:
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- Sishuo Wang
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autorequire:
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bindir: exe
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cert_chain: []
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date: 2019-12-
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date: 2019-12-20 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio
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