bio-biolinux 0.1.0

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+ lib/**/*.rb
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+ bin/*
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+ -
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+ features/**/*.feature
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+ LICENSE.txt
data/Gemfile ADDED
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+ source "http://rubygems.org"
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+ # Add dependencies required to use your gem here.
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+ # Example:
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+ # gem "activesupport", ">= 2.3.5"
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+
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+ # Add dependencies to develop your gem here.
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+ # Include everything needed to run rake, tests, features, etc.
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+ group :development do
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+ gem "shoulda", ">= 0"
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+ gem "bundler", "~> 1.0.0"
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+ gem "jeweler", "~> 1.6.4"
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+ gem "rcov", ">= 0"
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+ gem "bio", ">= 1.4.1"
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+ end
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+ GEM
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+ remote: http://rubygems.org/
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+ specs:
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+ bio (1.4.2)
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+ git (1.2.5)
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+ jeweler (1.6.4)
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+ bundler (~> 1.0)
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+ git (>= 1.2.5)
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+ rake
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+ rake (0.9.2)
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+ rcov (0.9.10)
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+ shoulda (2.11.3)
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+
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+ PLATFORMS
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+ ruby
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+
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+ DEPENDENCIES
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+ bio (>= 1.4.1)
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+ bundler (~> 1.0.0)
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+ jeweler (~> 1.6.4)
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+ rcov
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+ shoulda
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+ Copyright (c) 2011 Raoul J.P. Bonnal
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+
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+ Permission is hereby granted, free of charge, to any person obtaining
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+ a copy of this software and associated documentation files (the
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+ "Software"), to deal in the Software without restriction, including
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+ without limitation the rights to use, copy, modify, merge, publish,
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+ distribute, sublicense, and/or sell copies of the Software, and to
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+ permit persons to whom the Software is furnished to do so, subject to
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+ the following conditions:
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+
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+ The above copyright notice and this permission notice shall be
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+ included in all copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
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+ LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
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+ OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
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+ WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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+ = bio-biolinux
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+
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+ Description goes here.
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+
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+ == Contributing to bio-biolinux
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+
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+ * Check out the latest master to make sure the feature hasn't been implemented or the bug hasn't been fixed yet
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+ * Check out the issue tracker to make sure someone already hasn't requested it and/or contributed it
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+ * Fork the project
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+ * Start a feature/bugfix branch
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+ * Commit and push until you are happy with your contribution
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+ * Make sure to add tests for it. This is important so I don't break it in a future version unintentionally.
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+ * Please try not to mess with the Rakefile, version, or history. If you want to have your own version, or is otherwise necessary, that is fine, but please isolate to its own commit so I can cherry-pick around it.
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+
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+ == Copyright
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+
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+ Copyright (c) 2011 Raoul J.P. Bonnal. See LICENSE.txt for
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+ further details.
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+
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+ # encoding: utf-8
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+
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+ require 'rubygems'
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+ require 'bundler'
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+ begin
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+ Bundler.setup(:default, :development)
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+ rescue Bundler::BundlerError => e
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+ $stderr.puts e.message
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+ $stderr.puts "Run `bundle install` to install missing gems"
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+ exit e.status_code
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+ end
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+ require 'rake'
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+
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+ require 'jeweler'
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+ Jeweler::Tasks.new do |gem|
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+ # gem is a Gem::Specification... see http://docs.rubygems.org/read/chapter/20 for more options
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+ gem.name = "bio-biolinux"
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+ gem.homepage = "http://github.com/helios/bioruby-biolinux"
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+ gem.license = "MIT"
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+ gem.summary = %Q{Meta package for BioLinux distribution}
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+ gem.description = %Q{Meta package for BioLinux distribution: bio-core, bio-core-ext}
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+ gem.email = "ilpuccio.febo@gmail.com"
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+ gem.authors = ["Raoul J.P. Bonnal"]
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+ gem.add_runtime_dependency 'bio-core',["= 0.0.1"]
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+ gem.add_runtime_dependency 'bio-core-ext',["= 0.0.1"]
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+ # dependencies defined in Gemfile
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+ end
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+ Jeweler::RubygemsDotOrgTasks.new
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+
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+ require 'rake/testtask'
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+ Rake::TestTask.new(:test) do |test|
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+ test.libs << 'lib' << 'test'
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+ test.pattern = 'test/**/test_*.rb'
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+ test.verbose = true
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+ end
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+
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+ require 'rcov/rcovtask'
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+ Rcov::RcovTask.new do |test|
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+ test.libs << 'test'
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+ test.pattern = 'test/**/test_*.rb'
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+ test.verbose = true
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+ test.rcov_opts << '--exclude "gems/*"'
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+ end
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+
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+ task :default => :test
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+
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+ require 'rake/rdoctask'
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+ Rake::RDocTask.new do |rdoc|
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+ version = File.exist?('VERSION') ? File.read('VERSION') : ""
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+
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+ rdoc.rdoc_dir = 'rdoc'
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+ rdoc.title = "bio-biolinux #{version}"
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+ rdoc.rdoc_files.include('README*')
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+ rdoc.rdoc_files.include('lib/**/*.rb')
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+ end
data/VERSION ADDED
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+ 0.1.0
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+ # Generated by jeweler
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+ # DO NOT EDIT THIS FILE DIRECTLY
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+ # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
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+ # -*- encoding: utf-8 -*-
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+
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+ Gem::Specification.new do |s|
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+ s.name = %q{bio-biolinux}
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+ s.version = "0.1.0"
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+
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+ s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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+ s.authors = [%q{Raoul J.P. Bonnal}]
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+ s.date = %q{2011-09-24}
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+ s.description = %q{Meta package for BioLinux distribution: bio-core, bio-core-ext}
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+ s.email = %q{ilpuccio.febo@gmail.com}
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+ s.extra_rdoc_files = [
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+ "LICENSE.txt",
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+ "README.rdoc"
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+ ]
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+ s.files = [
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+ ".document",
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+ "Gemfile",
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+ "Gemfile.lock",
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+ "LICENSE.txt",
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+ "README.rdoc",
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+ "Rakefile",
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+ "VERSION",
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+ "bio-biolinux.gemspec"
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+ ]
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+ s.homepage = %q{http://github.com/helios/bioruby-biolinux}
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+ s.licenses = [%q{MIT}]
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+ s.require_paths = [%q{lib}]
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+ s.rubygems_version = %q{1.8.6}
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+ s.summary = %q{Meta package for BioLinux distribution}
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+
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+ if s.respond_to? :specification_version then
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+ s.specification_version = 3
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+
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+ if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
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+ s.add_development_dependency(%q<shoulda>, [">= 0"])
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+ s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
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+ s.add_development_dependency(%q<jeweler>, ["~> 1.6.4"])
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+ s.add_development_dependency(%q<rcov>, [">= 0"])
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+ s.add_development_dependency(%q<bio>, [">= 1.4.1"])
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+ s.add_runtime_dependency(%q<bio-core>, ["= 0.0.1"])
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+ s.add_runtime_dependency(%q<bio-core-ext>, ["= 0.0.1"])
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+ else
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+ s.add_dependency(%q<shoulda>, [">= 0"])
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+ s.add_dependency(%q<bundler>, ["~> 1.0.0"])
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+ s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
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+ s.add_dependency(%q<rcov>, [">= 0"])
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+ s.add_dependency(%q<bio>, [">= 1.4.1"])
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+ s.add_dependency(%q<bio-core>, ["= 0.0.1"])
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+ s.add_dependency(%q<bio-core-ext>, ["= 0.0.1"])
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+ end
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+ else
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+ s.add_dependency(%q<shoulda>, [">= 0"])
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+ s.add_dependency(%q<bundler>, ["~> 1.0.0"])
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+ s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
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+ s.add_dependency(%q<rcov>, [">= 0"])
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+ s.add_dependency(%q<bio>, [">= 1.4.1"])
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+ s.add_dependency(%q<bio-core>, ["= 0.0.1"])
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+ s.add_dependency(%q<bio-core-ext>, ["= 0.0.1"])
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+ end
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+ end
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+
metadata ADDED
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+ --- !ruby/object:Gem::Specification
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+ name: bio-biolinux
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+ version: !ruby/object:Gem::Version
4
+ version: 0.1.0
5
+ prerelease:
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+ platform: ruby
7
+ authors:
8
+ - Raoul J.P. Bonnal
9
+ autorequire:
10
+ bindir: bin
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+ cert_chain: []
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+ date: 2011-09-24 00:00:00.000000000Z
13
+ dependencies:
14
+ - !ruby/object:Gem::Dependency
15
+ name: shoulda
16
+ requirement: &2166422100 !ruby/object:Gem::Requirement
17
+ none: false
18
+ requirements:
19
+ - - ! '>='
20
+ - !ruby/object:Gem::Version
21
+ version: '0'
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+ type: :development
23
+ prerelease: false
24
+ version_requirements: *2166422100
25
+ - !ruby/object:Gem::Dependency
26
+ name: bundler
27
+ requirement: &2166420860 !ruby/object:Gem::Requirement
28
+ none: false
29
+ requirements:
30
+ - - ~>
31
+ - !ruby/object:Gem::Version
32
+ version: 1.0.0
33
+ type: :development
34
+ prerelease: false
35
+ version_requirements: *2166420860
36
+ - !ruby/object:Gem::Dependency
37
+ name: jeweler
38
+ requirement: &2166418860 !ruby/object:Gem::Requirement
39
+ none: false
40
+ requirements:
41
+ - - ~>
42
+ - !ruby/object:Gem::Version
43
+ version: 1.6.4
44
+ type: :development
45
+ prerelease: false
46
+ version_requirements: *2166418860
47
+ - !ruby/object:Gem::Dependency
48
+ name: rcov
49
+ requirement: &2166412500 !ruby/object:Gem::Requirement
50
+ none: false
51
+ requirements:
52
+ - - ! '>='
53
+ - !ruby/object:Gem::Version
54
+ version: '0'
55
+ type: :development
56
+ prerelease: false
57
+ version_requirements: *2166412500
58
+ - !ruby/object:Gem::Dependency
59
+ name: bio
60
+ requirement: &2166410560 !ruby/object:Gem::Requirement
61
+ none: false
62
+ requirements:
63
+ - - ! '>='
64
+ - !ruby/object:Gem::Version
65
+ version: 1.4.1
66
+ type: :development
67
+ prerelease: false
68
+ version_requirements: *2166410560
69
+ - !ruby/object:Gem::Dependency
70
+ name: bio-core
71
+ requirement: &2166408160 !ruby/object:Gem::Requirement
72
+ none: false
73
+ requirements:
74
+ - - =
75
+ - !ruby/object:Gem::Version
76
+ version: 0.0.1
77
+ type: :runtime
78
+ prerelease: false
79
+ version_requirements: *2166408160
80
+ - !ruby/object:Gem::Dependency
81
+ name: bio-core-ext
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+ requirement: &2166405620 !ruby/object:Gem::Requirement
83
+ none: false
84
+ requirements:
85
+ - - =
86
+ - !ruby/object:Gem::Version
87
+ version: 0.0.1
88
+ type: :runtime
89
+ prerelease: false
90
+ version_requirements: *2166405620
91
+ description: ! 'Meta package for BioLinux distribution: bio-core, bio-core-ext'
92
+ email: ilpuccio.febo@gmail.com
93
+ executables: []
94
+ extensions: []
95
+ extra_rdoc_files:
96
+ - LICENSE.txt
97
+ - README.rdoc
98
+ files:
99
+ - .document
100
+ - Gemfile
101
+ - Gemfile.lock
102
+ - LICENSE.txt
103
+ - README.rdoc
104
+ - Rakefile
105
+ - VERSION
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+ - bio-biolinux.gemspec
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+ homepage: http://github.com/helios/bioruby-biolinux
108
+ licenses:
109
+ - MIT
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+ post_install_message:
111
+ rdoc_options: []
112
+ require_paths:
113
+ - lib
114
+ required_ruby_version: !ruby/object:Gem::Requirement
115
+ none: false
116
+ requirements:
117
+ - - ! '>='
118
+ - !ruby/object:Gem::Version
119
+ version: '0'
120
+ segments:
121
+ - 0
122
+ hash: 2418309640504286143
123
+ required_rubygems_version: !ruby/object:Gem::Requirement
124
+ none: false
125
+ requirements:
126
+ - - ! '>='
127
+ - !ruby/object:Gem::Version
128
+ version: '0'
129
+ requirements: []
130
+ rubyforge_project:
131
+ rubygems_version: 1.8.6
132
+ signing_key:
133
+ specification_version: 3
134
+ summary: Meta package for BioLinux distribution
135
+ test_files: []