bel-rdf-jena 0.4.0.beta1-java

checksums.yaml

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data/.gemspec

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+Gem::Specification.new do |spec|
+  spec.name                     = 'bel-rdf-jena'
+  spec.version                  = '0.4.0.beta1'
+  spec.summary                  = """
+                                    Rdf Repository plugin for bel.rb using Apache Jena.
+                                  """.gsub(%r{^\s+}, ' ').gsub(%r{\n}, '')
+  spec.description              = """
+                                    An rdf repository plugin for bel.rb that uses Apache Jena's
+                                    TDB data storage to support default and named graphs.
+                                  """.gsub(%r{^\s+}, ' ').gsub(%r{\n}, '')
+  spec.license                  = 'Apache-2.0'
+  spec.authors                  = [
+                                    'Anthony Bargnesi',
+                                  ]
+  spec.email                    = [
+                                    'abargnesi@selventa.com',
+                                  ]
+  spec.files                    = [
+                                    Dir.glob('lib/**/*.{rb}'),
+                                    __FILE__,
+                                    'CHANGELOG.md',
+                                    'LICENSE',
+                                    'INSTALL.md',
+                                    'INSTALL_RUBY.md',
+                                    'README.md',
+                                  ].flatten!
+  spec.executables              = Dir.glob('bin/*').map(&File.method(:basename))
+  spec.homepage                 = 'https://github.com/OpenBEL/bel.rb-rdf-jena'
+  spec.rdoc_options             = [
+                                    '--title', 'BEL Rdf Repository - Apache Jena',
+                                    '--main', 'README.md',
+                                    '--line-numbers',
+                                    'CHANGELOG.md',
+                                    'LICENSE',
+                                    'INSTALL.md',
+                                    'INSTALL_RUBY.md',
+                                    'README.md',
+                                  ]
+
+  spec.platform                 = 'java'
+  spec.add_runtime_dependency     'rdf-jena'
+  spec.post_install_message     = %Q{
+******************************
+*  bel-rdf-jena plugin       *
+******************************
+Thank you for installing the bel-rdf-jena plugin to bel.rb.
+
+This plugin runs on JRuby and provides in-process access to
+Apache Jena TDB datasets. This provides you the ability to
+query/update default and named graphs.
+
+To verify the bel-rdf-jena plugin can be used by bel.rb
+execute the bel.rb command:
+
+    bel plugins --list
+
+To access this within bel.rb execute the following ruby code:
+
+    require 'bel'
+    rdf_jena_plugin = BEL::RdfRepository.plugins[:jena]
+    rdf_jena_plugin.create_repository(:tdb_directory => 'data')
+
+}
+end
+# vim: ft=ruby ts=2 sw=2:
+# encoding: utf-8

data/CHANGELOG.md

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+# Change Log
+All notable changes to bel-rdf-jena will be documented in this file. The curated log begins at changes to version 0.4.0.beta1.
+
+This project adheres to [Semantic Versioning](http://semver.org/).
+
+## [0.4.0.beta1][0.4.0.beta1] - 2015-12-01
+### Fixed
+### Changed
+### Added

data/INSTALL.md

@@ -0,0 +1,19 @@
+Install
+=======
+
+This library requires [Ruby](https://www.ruby-lang.org) (**>= 2.0.0**).  See [how to install ruby](https://github.com/OpenBEL/bel.rb-search-sqlite/blob/master/INSTALL_RUBY.md).
+
+Install from [RubyGems.org](http://rubygems.org/gems/bel-search-sqlite)
+
+```bash
+    gem install bel-rdf-jena
+```
+
+Build from master branch
+
+1. Obtain source for master branch.
+  - `git clone git@github.com:OpenBEL/bel.rb-rdf-jena.git`
+
+2. Build
+  - `gem build .gemspec`
+  - `gem install bel-rdf-jena-[VERSION].gem`

data/INSTALL_RUBY.md

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+# Install Ruby
+
+## Install Ruby (Windows)
+
+1. Download [RubyInstaller](http://rubyinstaller.org/downloads).
+   * Versions 2.x.x are supported.
+2. Install RubyInstaller version.
+   * Enable the _Add Ruby executables to your PATH_ option presented during installation.
+3. Open a command prompt (Windows Key + R then type `cmd`).
+   * Confirm installation by typing `ruby -v`.
+   * The output should show the ruby version (e.g. `ruby 2.0.0p451 (2014-02-24) [x64-mingw32]`).
+
+Continue with <a href="#install_bel_rdf_jena_gem">Install the bel-rdf-jena gem</a>.
+
+## Install Ruby (Mac OSX)
+
+_Option 1: Homebrew_
+
+1. Install with homebrew by typing `brew install ruby`.
+2. Add ruby commands to your PATH.
+   * Add to .bash_profile.
+     * `echo 'export PATH="/usr/local/Cellar/ruby/VERSION/bin:$PATH"' >> .bash_profile`
+   * Update environment by sourcing .bash_profile.
+     * `source ~/.bash_profile`
+3. Confirm installation by typing `ruby -v`.
+
+_Option 2: rbenv_
+
+* _Install with homebrew._
+   * `brew update`
+   * `brew install rbenv ruby-build`
+   * More details [here] (https://github.com/sstephenson/rbenv#homebrew-on-mac-os-x).
+
+* _Install with git._
+   * Clone rbenv repository.
+     * `git clone https://github.com/sstephenson/rbenv.git ~/.rbenv`
+   * Add to .bash_profile.
+     * `echo 'export PATH="$HOME/.rbenv/bin:$PATH"' >> ~/.bash_profile`
+   * Enable shims and autocompletion from the terminal.
+     * `echo 'eval "$(rbenv init -)"' >> ~/.bash_profile`
+   * Clone ruby-build repository.
+     * `git clone https://github.com/sstephenson/ruby-build.git ~/.rbenv/plugins/ruby-build`
+   * More details [here] (https://github.com/sstephenson/rbenv#installation).
+
+Continue with <a href="#install_bel_rdf_jena_gem">Install the bel-rdf-jena gem</a>.
+
+## Install Ruby (Linux)
+
+_Option 1: Install via package manager._
+
+* Example installation with Ubuntu.
+   * Type `sudo apt-get install ruby` in the terminal.
+
+_Option 2: rbenv_
+
+* _Install with git._
+   * Clone rbenv repository.
+     * `git clone https://github.com/sstephenson/rbenv.git ~/.rbenv`
+   * Add to .bash_profile.
+     * `echo 'export PATH="$HOME/.rbenv/bin:$PATH"' >> ~/.bash_profile`
+   * Enable shims and autocompletion from the terminal.
+     * `echo 'eval "$(rbenv init -)"' >> ~/.bash_profile`
+   * Clone ruby-build repository.
+     * `git clone https://github.com/sstephenson/ruby-build.git ~/.rbenv/plugins/ruby-build`
+   * More details [here] (https://github.com/sstephenson/rbenv#installation).
+
+Continue with <a href="#install_bel_rdf_jena_gem">Install the bel-rdf-jena gem</a>.
+
+<br><br>
+<div id="install_bel_rdf_jena_gem"></div>
+## Install the _bel-rdf-jena_ gem
+
+1. Open a terminal or command prompt.
+2. Use the `gem` command to install the `bel-rdf-jena` gem.
+   * `gem install bel-rdf-jena`
+3. You should see something like the following:
+
+<pre>
+    Fetching: bel-rdf-jena-0.1.0.gem (100%)
+    Successfully installed bel-rdf-jena-0.1.0
+    Parsing documentation for bel-rdf-jena-0.1.0
+    Installing ri documentation for bel-rdf-jena-0.1.0
+    1 gem installed
+</pre>
+
+<br><br>
+## Issues
+
+* If you have questions with the `bel-rdf-jena` gem please post to the [openbel-discuss] (https://groups.google.com/forum/#!forum/openbel-discuss) google group.
+* If you encounter errors please post an issue to [github issues] (https://github.com/OpenBEL/bel.rb-rdf-jena/issues).

data/LICENSE

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+http://www.apache.org/licenses/
+
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+9. Accepting Warranty or Additional Liability.
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+While redistributing the Work or Derivative Works thereof, You may choose to
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+
+END OF TERMS AND CONDITIONS
+
+APPENDIX: How to apply the Apache License to your work
+
+To apply the Apache License to your work, attach the following boilerplate
+notice, with the fields enclosed by brackets "[]" replaced with your own
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data/README.md

@@ -0,0 +1,40 @@
+# bel-rdf-jena
+
+This implements an RdfRepository plugin for [bel.rb](https://github.com/OpenBEL/bel.rb) using Apache Jena' TDB Storage. This plugin relies on [rdf-jena](https://github.com/abargnesi/rdf-jena) to interface with Apache Jena as an RDF.rb repository.
+
+## Features
+
+- Plugs in rdf-jena as an Rdf Repository plugin.
+
+## Requirements
+
+- JRuby 1.7 or 9k series (due to rdf-jena).
+
+How can I use this?
+------------------
+
+bel.rb provides an [approach to plugins](https://github.com/OpenBEL/bel.rb/wiki/Plugins-in-bel.rb) that is meant to be uncomplicated. The following steps will get you started:
+
+- Build gem with `gem build .gemspec` and install with `gem install bel-rdf-jena-0.4.0.beta1-java.gem`.
+- Now you have this plugin installed and ready for use in bel.rb!
+- With bel.rb installed run the command `bel plugins` to list available plugins.
+
+```bash
+$ bel plugins
+
+RDF Repository plugins
+----------------------
+
+ Name:        Apache Jena RDF Repository
+ Description: A repository of RDF data on Apache Jena using TDB storage.
+```
+
+- To create the search implementation in Ruby try:
+
+```ruby
+rdf_jena_plugin = BEL::RdfRepository.plugins[:jena]
+
+rdf_jena_plugin.create_repository(:tdb_directory => 'data')
+```
+
+- Enjoy access to RDF datasets through Apache Jena!

data/lib/bel/rdf_repository/plugins/jena.rb

@@ -0,0 +1,31 @@
+module BEL::RdfRepository::Plugins
+
+  module Jena
+
+    extend ::BEL::RdfRepository::ClassMethods
+
+    NAME        = 'Apache Jena RDF Repository'
+    DESCRIPTION = 'A repository of RDF data on Apache Jena using TDB storage.'
+
+    def self.create_repository(options = {})
+      require 'rdf/jena'
+
+      tdb_directory = options.delete(:tdb_directory)
+      unless tdb_directory
+        raise ArgumentError.new(
+          "The :tdb_directory option is required (pointing to a TDB storage directory)."
+        )
+      end
+
+      RDF::Jena::Repository.new(tdb_directory)
+    end
+
+    def self.name
+      NAME
+    end
+
+    def self.description
+      DESCRIPTION
+    end
+  end
+end

metadata

@@ -0,0 +1,98 @@
+--- !ruby/object:Gem::Specification
+name: bel-rdf-jena
+version: !ruby/object:Gem::Version
+  version: 0.4.0.beta1
+platform: java
+authors:
+- Anthony Bargnesi
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2015-12-01 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: rdf-jena
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: " An rdf repository plugin for bel.rb that uses Apache Jena's TDB data
+  storage to support default and named graphs. "
+email:
+- abargnesi@selventa.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gemspec"
+- CHANGELOG.md
+- INSTALL.md
+- INSTALL_RUBY.md
+- LICENSE
+- README.md
+- lib/bel/rdf_repository/plugins/jena.rb
+homepage: https://github.com/OpenBEL/bel.rb-rdf-jena
+licenses:
+- Apache-2.0
+metadata: {}
+post_install_message: |2+
+
+  ******************************
+  *  bel-rdf-jena plugin       *
+  ******************************
+  Thank you for installing the bel-rdf-jena plugin to bel.rb.
+
+  This plugin runs on JRuby and provides in-process access to
+  Apache Jena TDB datasets. This provides you the ability to
+  query/update default and named graphs.
+
+  To verify the bel-rdf-jena plugin can be used by bel.rb
+  execute the bel.rb command:
+
+      bel plugins --list
+
+  To access this within bel.rb execute the following ruby code:
+
+      require 'bel'
+      rdf_jena_plugin = BEL::RdfRepository.plugins[:jena]
+      rdf_jena_plugin.create_repository(:tdb_directory => 'data')
+
+rdoc_options:
+- "--title"
+- BEL Rdf Repository - Apache Jena
+- "--main"
+- README.md
+- "--line-numbers"
+- CHANGELOG.md
+- LICENSE
+- INSTALL.md
+- INSTALL_RUBY.md
+- README.md
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">"
+    - !ruby/object:Gem::Version
+      version: 1.3.1
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.4.5.1
+signing_key: 
+specification_version: 4
+summary: Rdf Repository plugin for bel.rb using Apache Jena.
+test_files: []
+has_rdoc: