bahuvrihi-molecules 0.1.0 → 0.1.1

data/Rakefile

@@ -13,6 +13,7 @@ Rake::TestTask.new(:test) do |t|
   t.libs << 'lib'
   t.pattern = File.join('test', ENV['subset'] || '', ENV['pattern'] || '**/*_test.rb')
   t.verbose = true
+  t.warning = true
 end
 
 #
@@ -25,35 +26,35 @@ def gemspec
   Thread.new { spec = eval("$SAFE = 3\n#{data}") }.join
   spec
 end
-
-Rake::GemPackageTask.new(gemspec) do |pkg|
-  pkg.need_tar = true
-end
 
-task :print_manifest do
-  # collect files from the gemspec, labeling 
-  # with true or false corresponding to the
-  # file existing or not
-  files = gemspec.files.inject({}) do |files, file|
-    files[File.expand_path(file)] = [File.exists?(file), file]
-    files
-  end
-  
-  # gather non-rdoc/pkg files for the project
-  # and add to the files list if they are not
-  # included already (marking by the absence
-  # of a label)
-  Dir.glob("**/*").each do |file|
-    next if file =~ /^(rdoc|pkg)/ || File.directory?(file)
-    
-    path = File.expand_path(file)
-    files[path] = ["", file] unless files.has_key?(path)
-  end
-  
-  # sort and output the results
-  files.values.sort_by {|exists, file| file }.each do |entry| 
-    puts "%-5s : %s" % entry
-  end
+Rake::GemPackageTask.new(gemspec) do |pkg|
+  pkg.need_tar = true
+end
+
+task :print_manifest do
+  # collect files from the gemspec, labeling 
+  # with true or false corresponding to the
+  # file existing or not
+  files = gemspec.files.inject({}) do |files, file|
+    files[File.expand_path(file)] = [File.exists?(file), file]
+    files
+  end
+  
+  # gather non-rdoc/pkg files for the project
+  # and add to the files list if they are not
+  # included already (marking by the absence
+  # of a label)
+  Dir.glob("**/*").each do |file|
+    next if file =~ /^(rdoc|pkg)/ || File.directory?(file)
+    
+    path = File.expand_path(file)
+    files[path] = ["", file] unless files.has_key?(path)
+  end
+  
+  # sort and output the results
+  files.values.sort_by {|exists, file| file }.each do |entry| 
+    puts "%-5s : %s" % entry
+  end
 end
 
 desc 'Generate documentation.'

data/lib/molecules/empirical_formula.rb

@@ -39,7 +39,7 @@ module Molecules
         factor = nil
         composition = Hash.new(0)
         scanner = StringScanner.new(formula.reverse)
-        while scanner.restsize > 0
+        while scanner.rest_size > 0
           case
           when scanner.scan_full(/\)(\d+-?)\(/, true, false)
             # found a factor
@@ -133,7 +133,7 @@ module Molecules
 
         # Parse elements and factors out of the formula from right to left     
         scanner = StringScanner.new(formula.reverse)
-        while scanner.restsize > 0
+        while scanner.rest_size > 0
 
           case
           when scanner.scan_full(/(\d+)/, true, false)

data/test/molecules/empirical_formula_class_test.rb

@@ -1,4 +1,4 @@
-require File.join(File.dirname(__FILE__), '../molecules_test_helper.rb') 
+require File.expand_path(File.join(File.dirname(__FILE__), '../molecules_test_helper.rb')) 
 require 'molecules/empirical_formula'
 
 class EmpiricalFormulaClassTest < Test::Unit::TestCase

data/test/molecules/empirical_formula_test.rb

@@ -1,4 +1,4 @@
-require File.join(File.dirname(__FILE__), '../molecules_test_helper.rb') 
+require File.expand_path(File.join(File.dirname(__FILE__), '../molecules_test_helper.rb')) 
 require 'molecules/empirical_formula'
 
 class EmpiricalFormulaTest < Test::Unit::TestCase

data/test/molecules/libraries/polypeptide_test.rb

@@ -1,4 +1,4 @@
-require File.join(File.dirname(__FILE__), '../../molecules_test_helper.rb') 
+require File.expand_path( File.join(File.dirname(__FILE__), '../../molecules_test_helper.rb') )
 require 'molecules/libraries/polypeptide'
 
 class PolypeptideTest < Test::Unit::TestCase

data/test/molecules/libraries/residue_test.rb

@@ -1,4 +1,4 @@
-require File.join(File.dirname(__FILE__), '../../molecules_test_helper.rb') 
+require File.expand_path( File.join(File.dirname(__FILE__), '../../molecules_test_helper.rb')) 
 require 'molecules/libraries/residue'
 
 class ResidueTest < Test::Unit::TestCase

data/test/molecules/utils_test.rb

@@ -1,4 +1,4 @@
-require File.join(File.dirname(__FILE__), '../molecules_test_helper.rb') 
+require File.expand_path(File.join(File.dirname(__FILE__), '../molecules_test_helper.rb')) 
 require 'molecules/utils'
 
 class UtilsTest < Test::Unit::TestCase
@@ -74,15 +74,15 @@ class UtilsTest < Test::Unit::TestCase
     a = [1,2,4]
     assert_equal a.object_id, multiply(a, 2).object_id
     assert_equal a.object_id, multiply(a, 0).object_id
-  end
-  
-  #
-  # count test
-  #
-  
-  def test_count_documenation
-    assert_equal [3, 2, 2] , count("abcabca", ["a", "b", "c"])
-    assert_equal [3, 4], count("abcabca", ["a", "bc"])
+  end
+  
+  #
+  # count test
+  #
+  
+  def test_count_documenation
+    assert_equal [3, 2, 2] , count("abcabca", ["a", "b", "c"])
+    assert_equal [3, 4], count("abcabca", ["a", "bc"])
   end
   
   #

data/test/molecules_test.rb

@@ -1,4 +1,4 @@
-require File.join(File.dirname(__FILE__), 'molecules_test_helper.rb') 
+require File.expand_path( File.join(File.dirname(__FILE__), 'molecules_test_helper.rb') )
 require 'molecules'
 
 class MoleculesTest < Test::Unit::TestCase

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification 
 name: bahuvrihi-molecules
 version: !ruby/object:Gem::Version 
-  version: 0.1.0
+  version: 0.1.1
 platform: ruby
 authors: 
 - Simon Chiang
@@ -9,7 +9,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2008-07-08 00:00:00 -07:00
+date: 2008-08-13 00:00:00 -07:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency