aws-sdk-omics 1.31.0 → 1.32.0

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data/CHANGELOG.md

@@ -1,6 +1,11 @@
 Unreleased Changes
 ------------------
 
+1.32.0 (2024-08-27)
+------------------
+
+* Feature - Adds data provenance to import jobs from read sets and references
+
 1.31.0 (2024-07-02)
 ------------------
 

data/VERSION

@@ -1 +1 @@
-1.31.0
+1.32.0

data/lib/aws-sdk-omics/client.rb

@@ -945,19 +945,22 @@ module Aws::Omics
       req.send_request(options)
     end
 
-    # Creates a run group.
+    # You can optionally create a run group to limit the compute resources
+    # for the runs that you add to the group.
     #
     # @option params [String] :name
     #   A name for the group.
     #
     # @option params [Integer] :max_cpus
-    #   The maximum number of CPUs to use in the group.
+    #   The maximum number of CPUs that can run concurrently across all active
+    #   runs in the run group.
     #
     # @option params [Integer] :max_runs
-    #   The maximum number of concurrent runs for the group.
+    #   The maximum number of runs that can be running at the same time.
     #
     # @option params [Integer] :max_duration
-    #   A maximum run time for the group in minutes.
+    #   The maximum time for each run (in minutes). If a run exceeds the
+    #   maximum run time, the run fails automatically.
     #
     # @option params [Hash<String,String>] :tags
     #   Tags for the group.
@@ -970,7 +973,8 @@ module Aws::Omics
     #   not need to pass this option.**
     #
     # @option params [Integer] :max_gpus
-    #   The maximum GPUs that can be used by a run group.
+    #   The maximum number of GPUs that can run concurrently across all active
+    #   runs in the run group.
     #
     # @return [Types::CreateRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
     #
@@ -1088,9 +1092,9 @@ module Aws::Omics
     #
     # The following resources support cross-account sharing:
     #
-    # * Healthomics variant stores
+    # * HealthOmics variant stores
     #
-    # * Healthomics annotation stores
+    # * HealthOmics annotation stores
     #
     # * Private workflows
     #
@@ -1216,7 +1220,7 @@ module Aws::Omics
     #   A parameter template for the workflow.
     #
     # @option params [Integer] :storage_capacity
-    #   The storage capacity for the workflow in gibibytes.
+    #   The default storage capacity for the workflow runs, in gibibytes.
     #
     # @option params [Hash<String,String>] :tags
     #   Tags for the workflow.
@@ -1952,6 +1956,7 @@ module Aws::Omics
     #   resp.sources[0].description #=> String
     #   resp.sources[0].tags #=> Hash
     #   resp.sources[0].tags["TagKey"] #=> String
+    #   resp.sources[0].read_set_id #=> String
     #
     #
     # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1993,6 +1998,7 @@ module Aws::Omics
     #   * {Types::GetReadSetMetadataResponse#status_message #status_message} => String
     #   * {Types::GetReadSetMetadataResponse#creation_type #creation_type} => String
     #   * {Types::GetReadSetMetadataResponse#etag #etag} => Types::ETag
+    #   * {Types::GetReadSetMetadataResponse#creation_job_id #creation_job_id} => String
     #
     # @example Request syntax with placeholder values
     #
@@ -2035,6 +2041,7 @@ module Aws::Omics
     #   resp.etag.algorithm #=> String, one of "FASTQ_MD5up", "BAM_MD5up", "CRAM_MD5up", "FASTQ_SHA256up", "BAM_SHA256up", "CRAM_SHA256up", "FASTQ_SHA512up", "BAM_SHA512up", "CRAM_SHA512up"
     #   resp.etag.source1 #=> String
     #   resp.etag.source2 #=> String
+    #   resp.creation_job_id #=> String
     #
     # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadata AWS API Documentation
     #
@@ -2132,6 +2139,7 @@ module Aws::Omics
     #   resp.sources[0].description #=> String
     #   resp.sources[0].tags #=> Hash
     #   resp.sources[0].tags["TagKey"] #=> String
+    #   resp.sources[0].reference_id #=> String
     #
     #
     # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -2167,6 +2175,8 @@ module Aws::Omics
     #   * {Types::GetReferenceMetadataResponse#creation_time #creation_time} => Time
     #   * {Types::GetReferenceMetadataResponse#update_time #update_time} => Time
     #   * {Types::GetReferenceMetadataResponse#files #files} => Types::ReferenceFiles
+    #   * {Types::GetReferenceMetadataResponse#creation_type #creation_type} => String
+    #   * {Types::GetReferenceMetadataResponse#creation_job_id #creation_job_id} => String
     #
     # @example Request syntax with placeholder values
     #
@@ -2194,6 +2204,8 @@ module Aws::Omics
     #   resp.files.index.part_size #=> Integer
     #   resp.files.index.content_length #=> Integer
     #   resp.files.index.s3_access.s3_uri #=> String
+    #   resp.creation_type #=> String, one of "IMPORT"
+    #   resp.creation_job_id #=> String
     #
     # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceMetadata AWS API Documentation
     #
@@ -4742,7 +4754,7 @@ module Aws::Omics
         params: params,
         config: config)
       context[:gem_name] = 'aws-sdk-omics'
-      context[:gem_version] = '1.31.0'
+      context[:gem_version] = '1.32.0'
       Seahorse::Client::Request.new(handlers, context)
     end
 

data/lib/aws-sdk-omics/client_api.rb

@@ -83,6 +83,7 @@ module Aws::Omics
     CreateWorkflowRequest = Shapes::StructureShape.new(name: 'CreateWorkflowRequest')
     CreateWorkflowRequestStorageCapacityInteger = Shapes::IntegerShape.new(name: 'CreateWorkflowRequestStorageCapacityInteger')
     CreateWorkflowResponse = Shapes::StructureShape.new(name: 'CreateWorkflowResponse')
+    CreationJobId = Shapes::StringShape.new(name: 'CreationJobId')
     CreationTime = Shapes::TimestampShape.new(name: 'CreationTime', timestampFormat: "iso8601")
     CreationType = Shapes::StringShape.new(name: 'CreationType')
     DeleteAnnotationStoreRequest = Shapes::StructureShape.new(name: 'DeleteAnnotationStoreRequest')
@@ -317,6 +318,7 @@ module Aws::Omics
     ReadSetUploadPartListItemPartSizeLong = Shapes::IntegerShape.new(name: 'ReadSetUploadPartListItemPartSizeLong')
     ReferenceArn = Shapes::StringShape.new(name: 'ReferenceArn')
     ReferenceArnFilter = Shapes::StringShape.new(name: 'ReferenceArnFilter')
+    ReferenceCreationType = Shapes::StringShape.new(name: 'ReferenceCreationType')
     ReferenceDescription = Shapes::StringShape.new(name: 'ReferenceDescription')
     ReferenceFile = Shapes::StringShape.new(name: 'ReferenceFile')
     ReferenceFiles = Shapes::StructureShape.new(name: 'ReferenceFiles')
@@ -1043,6 +1045,7 @@ module Aws::Omics
     GetReadSetMetadataResponse.add_member(:status_message, Shapes::ShapeRef.new(shape: ReadSetStatusMessage, location_name: "statusMessage"))
     GetReadSetMetadataResponse.add_member(:creation_type, Shapes::ShapeRef.new(shape: CreationType, location_name: "creationType"))
     GetReadSetMetadataResponse.add_member(:etag, Shapes::ShapeRef.new(shape: ETag, location_name: "etag"))
+    GetReadSetMetadataResponse.add_member(:creation_job_id, Shapes::ShapeRef.new(shape: CreationJobId, location_name: "creationJobId"))
     GetReadSetMetadataResponse.struct_class = Types::GetReadSetMetadataResponse
 
     GetReadSetRequest.add_member(:id, Shapes::ShapeRef.new(shape: ReadSetId, required: true, location: "uri", location_name: "id"))
@@ -1084,6 +1087,8 @@ module Aws::Omics
     GetReferenceMetadataResponse.add_member(:creation_time, Shapes::ShapeRef.new(shape: SyntheticTimestamp_date_time, required: true, location_name: "creationTime"))
     GetReferenceMetadataResponse.add_member(:update_time, Shapes::ShapeRef.new(shape: SyntheticTimestamp_date_time, required: true, location_name: "updateTime"))
     GetReferenceMetadataResponse.add_member(:files, Shapes::ShapeRef.new(shape: ReferenceFiles, location_name: "files"))
+    GetReferenceMetadataResponse.add_member(:creation_type, Shapes::ShapeRef.new(shape: ReferenceCreationType, location_name: "creationType"))
+    GetReferenceMetadataResponse.add_member(:creation_job_id, Shapes::ShapeRef.new(shape: CreationJobId, location_name: "creationJobId"))
     GetReferenceMetadataResponse.struct_class = Types::GetReferenceMetadataResponse
 
     GetReferenceRequest.add_member(:id, Shapes::ShapeRef.new(shape: ReferenceId, required: true, location: "uri", location_name: "id"))
@@ -1283,6 +1288,7 @@ module Aws::Omics
     ImportReadSetSourceItem.add_member(:name, Shapes::ShapeRef.new(shape: ReadSetName, location_name: "name"))
     ImportReadSetSourceItem.add_member(:description, Shapes::ShapeRef.new(shape: ReadSetDescription, location_name: "description"))
     ImportReadSetSourceItem.add_member(:tags, Shapes::ShapeRef.new(shape: TagMap, location_name: "tags"))
+    ImportReadSetSourceItem.add_member(:read_set_id, Shapes::ShapeRef.new(shape: ReadSetId, location_name: "readSetId"))
     ImportReadSetSourceItem.struct_class = Types::ImportReadSetSourceItem
 
     ImportReadSetSourceList.member = Shapes::ShapeRef.new(shape: ImportReadSetSourceItem)
@@ -1308,6 +1314,7 @@ module Aws::Omics
     ImportReferenceSourceItem.add_member(:name, Shapes::ShapeRef.new(shape: ReferenceName, location_name: "name"))
     ImportReferenceSourceItem.add_member(:description, Shapes::ShapeRef.new(shape: ReferenceDescription, location_name: "description"))
     ImportReferenceSourceItem.add_member(:tags, Shapes::ShapeRef.new(shape: TagMap, location_name: "tags"))
+    ImportReferenceSourceItem.add_member(:reference_id, Shapes::ShapeRef.new(shape: ReferenceId, location_name: "referenceId"))
     ImportReferenceSourceItem.struct_class = Types::ImportReferenceSourceItem
 
     ImportReferenceSourceList.member = Shapes::ShapeRef.new(shape: ImportReferenceSourceItem)
@@ -2131,9 +2138,10 @@ module Aws::Omics
 
       api.metadata = {
         "apiVersion" => "2022-11-28",
+        "auth" => ["aws.auth#sigv4"],
         "endpointPrefix" => "omics",
-        "jsonVersion" => "1.1",
         "protocol" => "rest-json",
+        "protocols" => ["rest-json"],
         "serviceFullName" => "Amazon Omics",
         "serviceId" => "Omics",
         "signatureVersion" => "v4",
@@ -3694,6 +3702,7 @@ module Aws::Omics
         o.http_method = "PUT"
         o.http_request_uri = "/sequencestore/{sequenceStoreId}/upload/{uploadId}/part"
         o['authtype'] = "v4-unsigned-body"
+        o['unsignedPayload'] = true
         o.endpoint_pattern = {
           "hostPrefix" => "storage-",
         }

data/lib/aws-sdk-omics/types.rb

@@ -898,15 +898,17 @@ module Aws::Omics
     #   @return [String]
     #
     # @!attribute [rw] max_cpus
-    #   The maximum number of CPUs to use in the group.
+    #   The maximum number of CPUs that can run concurrently across all
+    #   active runs in the run group.
     #   @return [Integer]
     #
     # @!attribute [rw] max_runs
-    #   The maximum number of concurrent runs for the group.
+    #   The maximum number of runs that can be running at the same time.
     #   @return [Integer]
     #
     # @!attribute [rw] max_duration
-    #   A maximum run time for the group in minutes.
+    #   The maximum time for each run (in minutes). If a run exceeds the
+    #   maximum run time, the run fails automatically.
     #   @return [Integer]
     #
     # @!attribute [rw] tags
@@ -922,7 +924,8 @@ module Aws::Omics
     #   @return [String]
     #
     # @!attribute [rw] max_gpus
-    #   The maximum GPUs that can be used by a run group.
+    #   The maximum number of GPUs that can run concurrently across all
+    #   active runs in the run group.
     #   @return [Integer]
     #
     # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateRunGroupRequest AWS API Documentation
@@ -1191,7 +1194,7 @@ module Aws::Omics
     #   @return [Hash<String,Types::WorkflowParameter>]
     #
     # @!attribute [rw] storage_capacity
-    #   The storage capacity for the workflow in gibibytes.
+    #   The default storage capacity for the workflow runs, in gibibytes.
     #   @return [Integer]
     #
     # @!attribute [rw] tags
@@ -2216,6 +2219,10 @@ module Aws::Omics
     #   semantic content.
     #   @return [Types::ETag]
     #
+    # @!attribute [rw] creation_job_id
+    #   The read set's creation job ID.
+    #   @return [String]
+    #
     # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadataResponse AWS API Documentation
     #
     class GetReadSetMetadataResponse < Struct.new(
@@ -2234,7 +2241,8 @@ module Aws::Omics
       :files,
       :status_message,
       :creation_type,
-      :etag)
+      :etag,
+      :creation_job_id)
       SENSITIVE = []
       include Aws::Structure
     end
@@ -2399,6 +2407,14 @@ module Aws::Omics
     #   The reference's files.
     #   @return [Types::ReferenceFiles]
     #
+    # @!attribute [rw] creation_type
+    #   The reference's creation type.
+    #   @return [String]
+    #
+    # @!attribute [rw] creation_job_id
+    #   The reference's creation job ID.
+    #   @return [String]
+    #
     # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceMetadataResponse AWS API Documentation
     #
     class GetReferenceMetadataResponse < Struct.new(
@@ -2411,7 +2427,9 @@ module Aws::Omics
       :description,
       :creation_time,
       :update_time,
-      :files)
+      :files,
+      :creation_type,
+      :creation_job_id)
       SENSITIVE = []
       include Aws::Structure
     end
@@ -3159,7 +3177,7 @@ module Aws::Omics
     #   @return [Hash<String,Types::WorkflowParameter>]
     #
     # @!attribute [rw] storage_capacity
-    #   The workflow's storage capacity in gibibytes.
+    #   The workflow's default run storage capacity in gibibytes.
     #   @return [Integer]
     #
     # @!attribute [rw] creation_time
@@ -3315,6 +3333,10 @@ module Aws::Omics
     #   The source's tags.
     #   @return [Hash<String,String>]
     #
+    # @!attribute [rw] read_set_id
+    #   The source's read set ID.
+    #   @return [String]
+    #
     # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ImportReadSetSourceItem AWS API Documentation
     #
     class ImportReadSetSourceItem < Struct.new(
@@ -3328,7 +3350,8 @@ module Aws::Omics
       :reference_arn,
       :name,
       :description,
-      :tags)
+      :tags,
+      :read_set_id)
       SENSITIVE = []
       include Aws::Structure
     end
@@ -3422,6 +3445,10 @@ module Aws::Omics
     #   The source's tags.
     #   @return [Hash<String,String>]
     #
+    # @!attribute [rw] reference_id
+    #   The source's reference ID.
+    #   @return [String]
+    #
     # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ImportReferenceSourceItem AWS API Documentation
     #
     class ImportReferenceSourceItem < Struct.new(
@@ -3430,7 +3457,8 @@ module Aws::Omics
       :status_message,
       :name,
       :description,
-      :tags)
+      :tags,
+      :reference_id)
       SENSITIVE = []
       include Aws::Structure
     end

data/lib/aws-sdk-omics.rb

@@ -53,6 +53,6 @@ require_relative 'aws-sdk-omics/customizations'
 # @!group service
 module Aws::Omics
 
-  GEM_VERSION = '1.31.0'
+  GEM_VERSION = '1.32.0'
 
 end

data/sig/client.rbs

@@ -612,6 +612,7 @@ module Aws
         def status_message: () -> ::String
         def creation_type: () -> ("IMPORT" | "UPLOAD")
         def etag: () -> Types::ETag
+        def creation_job_id: () -> ::String
       end
       # https://docs.aws.amazon.com/sdk-for-ruby/v3/api/Aws/Omics/Client.html#get_read_set_metadata-instance_method
       def get_read_set_metadata: (
@@ -664,6 +665,8 @@ module Aws
         def creation_time: () -> ::Time
         def update_time: () -> ::Time
         def files: () -> Types::ReferenceFiles
+        def creation_type: () -> ("IMPORT")
+        def creation_job_id: () -> ::String
       end
       # https://docs.aws.amazon.com/sdk-for-ruby/v3/api/Aws/Omics/Client.html#get_reference_metadata-instance_method
       def get_reference_metadata: (

data/sig/types.rbs

@@ -649,6 +649,7 @@ module Aws::Omics
       attr_accessor status_message: ::String
       attr_accessor creation_type: ("IMPORT" | "UPLOAD")
       attr_accessor etag: Types::ETag
+      attr_accessor creation_job_id: ::String
       SENSITIVE: []
     end
 
@@ -700,6 +701,8 @@ module Aws::Omics
       attr_accessor creation_time: ::Time
       attr_accessor update_time: ::Time
       attr_accessor files: Types::ReferenceFiles
+      attr_accessor creation_type: ("IMPORT")
+      attr_accessor creation_job_id: ::String
       SENSITIVE: []
     end
 
@@ -941,6 +944,7 @@ module Aws::Omics
       attr_accessor name: ::String
       attr_accessor description: ::String
       attr_accessor tags: ::Hash[::String, ::String]
+      attr_accessor read_set_id: ::String
       SENSITIVE: []
     end
 
@@ -968,6 +972,7 @@ module Aws::Omics
       attr_accessor name: ::String
       attr_accessor description: ::String
       attr_accessor tags: ::Hash[::String, ::String]
+      attr_accessor reference_id: ::String
       SENSITIVE: []
     end
 

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: aws-sdk-omics
 version: !ruby/object:Gem::Version
-  version: 1.31.0
+  version: 1.32.0
 platform: ruby
 authors:
 - Amazon Web Services
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2024-07-02 00:00:00.000000000 Z
+date: 2024-08-27 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: aws-sdk-core
@@ -36,14 +36,14 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.1'
+        version: '1.5'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.1'
+        version: '1.5'
 description: Official AWS Ruby gem for Amazon Omics. This gem is part of the AWS SDK
   for Ruby.
 email: