arvados 0.1.pre.20130710104038

checksums.yaml

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+---
+SHA1:
+  metadata.gz: 6d8302e2cefad2772e175c0144ab65c6d5bbb617
+  data.tar.gz: 75a8a641a6d0515496ef81d8c2019bb278e07040
+SHA512:
+  metadata.gz: ce4cd9b45622b20b52508cad68069afcfea15bfb8e673aa76764607abb295ba6632d8588a2e070f8e41ff8f95aece4a732d76618e3953c0b3767509916b4b462
+  data.tar.gz: 8cbf824e87805119d078efb1ad29291a992ca8efb0dfce1e9108fd87ab45830c33ff56f69fa8a7a11ea89fbfca5fb6a368ec8e7f77c698d9950e8044c276b38c

data/lib/arvados.rb

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+require 'rubygems'
+require 'google/api_client'
+require 'active_support/inflector'
+require 'json'
+
+ActiveSupport::Inflector.inflections do |inflect|
+  inflect.irregular 'specimen', 'specimens'
+  inflect.irregular 'human', 'humans'
+end
+
+module Kernel
+  def suppress_warnings
+    original_verbosity = $VERBOSE
+    $VERBOSE = nil
+    result = yield
+    $VERBOSE = original_verbosity
+    return result
+  end
+end
+
+class Arvados
+
+  @@debuglevel = 0
+  class << self
+    attr_accessor :debuglevel
+  end
+
+  def initialize(opts={})
+    @application_version ||= 0.0
+    @application_name ||= File.split($0).last
+
+    @arvados_api_version = opts[:api_version] ||
+      ENV['ARVADOS_API_VERSION'] ||
+      'v1'
+    @arvados_api_host = opts[:api_host] ||
+      ENV['ARVADOS_API_HOST'] or
+      raise "#{$0}: no :api_host or ENV[ARVADOS_API_HOST] provided."
+    @arvados_api_token = opts[:api_token] ||
+      ENV['ARVADOS_API_TOKEN'] or
+      raise "#{$0}: no :api_token or ENV[ARVADOS_API_TOKEN] provided."
+
+    @suppress_ssl_warnings = opts[:suppress_ssl_warnings] || false
+
+    if @suppress_ssl_warnings
+      suppress_warnings do
+        OpenSSL::SSL.const_set 'VERIFY_PEER', OpenSSL::SSL::VERIFY_NONE
+      end
+    end
+
+    # Define a class and an Arvados instance method for each Arvados
+    # resource. After this, self.job will return Arvados::Job;
+    # self.job.new() and self.job.find() will do what you want.
+    _arvados = self
+    self.arvados_api.schemas.each do |classname, schema|
+      next if classname.match /List$/
+      klass = Class.new(Arvados::Model) do
+        def self.arvados
+          @arvados
+        end
+        def self.api_models_sym
+          @api_models_sym
+        end
+        def self.api_model_sym
+          @api_model_sym
+        end
+      end
+
+      # Define the resource methods (create, get, update, delete, ...)
+      self.
+        arvados_api.
+        send(classname.underscore.split('/').last.pluralize.to_sym).
+        discovered_methods.
+        collect(&:name).
+        each do |method_name|
+        class << klass; self; end.class_eval do
+          define_method method_name do |*params|
+            self.api_exec(method_name.to_sym, *params)
+          end
+        end
+      end
+
+      # Give the new class access to the API
+      klass.instance_eval do
+        @arvados = _arvados
+        # These should be pulled from the discovery document instead:
+        @api_models_sym = classname.underscore.split('/').last.pluralize.to_sym
+        @api_model_sym = classname.underscore.split('/').last.to_sym
+      end
+
+      # This might produce confusing results when using multiple
+      # Arvados instances.
+      Arvados.const_set classname, klass
+
+      self.class.class_eval do
+        define_method classname.underscore do
+          klass
+        end
+      end
+    end
+  end
+
+  class Google::APIClient
+    def discovery_document(api, version)
+      api = api.to_s
+      return @discovery_documents["#{api}:#{version}"] ||=
+        begin
+          response = self.execute!(
+                                   :http_method => :get,
+                                   :uri => self.discovery_uri(api, version),
+                                   :authenticated => false
+                                   )
+          response.body.class == String ? JSON.parse(response.body) : response.body
+        end
+    end
+  end
+
+  def client
+    @client ||= Google::APIClient.
+      new(:host => @arvados_api_host,
+          :application_name => @application_name,
+          :application_version => @application_version.to_s)
+  end
+
+  def arvados_api
+    @arvados_api ||= self.client.discovered_api('arvados', @arvados_api_version)
+  end
+
+  def self.debuglog(message, verbosity=1)
+    $stderr.puts "#{File.split($0).last} #{$$}: #{message}" if @@debuglevel >= verbosity
+  end
+
+  class Model
+    def self.arvados_api
+      arvados.arvados_api
+    end
+    def self.client
+      arvados.client
+    end
+    def self.debuglog(*args)
+      arvados.class.debuglog *args
+    end
+    def debuglog(*args)
+      self.class.arvados.class.debuglog *args
+    end
+    def self.api_exec(method, parameters={})
+      parameters = parameters.
+        merge(:api_token => ENV['ARVADOS_API_TOKEN'])
+      parameters.each do |k,v|
+        parameters[k] = v.to_json if v.is_a? Array or v.is_a? Hash
+      end
+      result = client.
+        execute(:api_method => arvados_api.send(api_models_sym).send(method),
+                :authenticated => false,
+                :parameters => parameters)
+      JSON.parse result.body, :symbolize_names => true
+    end
+
+    def []=(x,y)
+      @attributes_to_update[x] = y
+      @attributes[x] = y
+    end
+    def [](x)
+      if @attributes[x].is_a? Hash or @attributes[x].is_a? Array
+        # We won't be notified via []= if these change, so we'll just
+        # assume they are going to get changed, and submit them if
+        # save() is called.
+        @attributes_to_update[x] = @attributes[x]
+      end
+      @attributes[x]
+    end
+    def save
+      @attributes_to_update.keys.each do |k|
+        @attributes_to_update[k] = @attributes[k]
+      end
+      j = self.class.api_exec :update, {
+        :uuid => @attributes[:uuid],
+        self.class.api_model_sym => @attributes_to_update.to_json
+      }
+      unless j.is_a? Hash and j[:uuid]
+        debuglog "Failed to save #{self.to_s}: #{j[:errors] rescue nil}", 0
+        nil
+      else
+        @attributes_to_update = {}
+        @attributes = j
+      end
+    end
+
+    protected
+
+    def initialize(j)
+      @attributes_to_update = {}
+      @attributes = j
+    end
+  end
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: arvados
+version: !ruby/object:Gem::Version
+  version: 0.1.pre.20130710104038
+platform: ruby
+authors:
+- Arvados Authors
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2013-07-10 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: google-api-client
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: 0.6.3
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: 0.6.3
+- !ruby/object:Gem::Dependency
+  name: activesupport
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: 3.2.13
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: 3.2.13
+- !ruby/object:Gem::Dependency
+  name: json
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: 1.7.7
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: 1.7.7
+description: This is the Arvados SDK gem, git revision 7a5ae650df19557a5fa88a8a1ae73ae07cad01cf
+email: gem-dev@clinicalfuture.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- lib/arvados.rb
+homepage: http://arvados.org
+licenses:
+- Apache License, Version 2.0
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - '>'
+    - !ruby/object:Gem::Version
+      version: 1.3.1
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.0.0
+signing_key: 
+specification_version: 4
+summary: Arvados SDK Ruby
+test_files: []