arvados-cli 0.1.20151111160124 → 0.1.20151113142812
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- checksums.yaml +4 -4
- data/bin/crunch-job +12 -5
- metadata +3 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
|
+
metadata.gz: 9bcb8ae09c736d9865677d82cb6323910af2a295
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4
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+
data.tar.gz: c5fc1244bbc70e3e8f877e0e47df628988737a79
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: b26edba3728a8c8dd6476806fb0557ba38de645da4d78919826c5ac53e2d020a2c9b9f506dc1f23c20cfd75e35904890f7fcc7cd180adaa2b1d3d4d33999c92e
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7
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+
data.tar.gz: 3bcd6ab6627deaac21c3fd14d98f219e44c1266c85fa053ff7ff9d84d732f1e08831dc717a84b35732fc736f9451d0d70f7570d6242e4824d008230533001262
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data/bin/crunch-job
CHANGED
@@ -820,6 +820,9 @@ update_progress_stats();
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820
820
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THISROUND:
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821
821
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for (my $todo_ptr = 0; $todo_ptr <= $#jobstep_todo; $todo_ptr ++)
|
822
822
|
{
|
823
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+
# Don't create new tasks if we already know the job's final result.
|
824
|
+
last if defined($main::success);
|
825
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+
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823
826
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my $id = $jobstep_todo[$todo_ptr];
|
824
827
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my $Jobstep = $jobstep[$id];
|
825
828
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if ($Jobstep->{level} != $level)
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@@ -1018,7 +1021,7 @@ for (my $todo_ptr = 0; $todo_ptr <= $#jobstep_todo; $todo_ptr ++)
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1018
1021
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||
|
1019
1022
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($round_num_freeslots > @freeslot && $todo_ptr+1 > $#jobstep_todo))
|
1020
1023
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{
|
1021
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-
last THISROUND if $main::please_freeze
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1024
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+
last THISROUND if $main::please_freeze;
|
1022
1025
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if ($main::please_info)
|
1023
1026
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{
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1024
1027
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$main::please_info = 0;
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@@ -1695,20 +1698,24 @@ sub log_writer_finish()
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|
1695
1698
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|
1696
1699
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close($log_pipe_in);
|
1697
1700
|
|
1701
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+
my $logger_failed = 0;
|
1698
1702
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my $read_result = log_writer_read_output(120);
|
1699
1703
|
if ($read_result == -1) {
|
1704
|
+
$logger_failed = -1;
|
1700
1705
|
Log (undef, "timed out reading from 'arv-put'");
|
1701
1706
|
} elsif ($read_result != 0) {
|
1707
|
+
$logger_failed = -2;
|
1702
1708
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Log(undef, "failed to read arv-put log manifest to EOF");
|
1703
1709
|
}
|
1704
1710
|
|
1705
1711
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waitpid($log_pipe_pid, 0);
|
1706
1712
|
if ($?) {
|
1713
|
+
$logger_failed ||= $?;
|
1707
1714
|
Log(undef, "log_writer_finish: arv-put exited " . exit_status_s($?))
|
1708
1715
|
}
|
1709
1716
|
|
1710
1717
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close($log_pipe_out);
|
1711
|
-
my $arv_put_output = $log_pipe_out_buf;
|
1718
|
+
my $arv_put_output = $logger_failed ? undef : $log_pipe_out_buf;
|
1712
1719
|
$log_pipe_pid = $log_pipe_in = $log_pipe_out = $log_pipe_out_buf =
|
1713
1720
|
$log_pipe_out_select = undef;
|
1714
1721
|
|
@@ -1774,13 +1781,13 @@ sub save_meta
|
|
1774
1781
|
my $justcheckpoint = shift; # false if this will be the last meta saved
|
1775
1782
|
return if $justcheckpoint; # checkpointing is not relevant post-Warehouse.pm
|
1776
1783
|
return unless log_writer_is_active();
|
1784
|
+
my $log_manifest = log_writer_finish();
|
1785
|
+
return unless defined($log_manifest);
|
1777
1786
|
|
1778
|
-
my $log_manifest = "";
|
1779
1787
|
if ($Job->{log}) {
|
1780
1788
|
my $prev_log_coll = api_call("collections/get", uuid => $Job->{log});
|
1781
|
-
$log_manifest
|
1789
|
+
$log_manifest = $prev_log_coll->{manifest_text} . $log_manifest;
|
1782
1790
|
}
|
1783
|
-
$log_manifest .= log_writer_finish();
|
1784
1791
|
|
1785
1792
|
my $log_coll = api_call(
|
1786
1793
|
"collections/create", ensure_unique_name => 1, collection => {
|
metadata
CHANGED
@@ -1,14 +1,14 @@
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|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: arvados-cli
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
|
+
version: 0.1.20151113142812
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Arvados Authors
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2015-11-
|
11
|
+
date: 2015-11-13 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: arvados
|
@@ -178,7 +178,7 @@ dependencies:
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|
178
178
|
- - "<"
|
179
179
|
- !ruby/object:Gem::Version
|
180
180
|
version: 1.0.0
|
181
|
-
description: Arvados command line tools, git commit
|
181
|
+
description: Arvados command line tools, git commit 6de60c7db7a98405ef7ae4ac5eb20498f095416c
|
182
182
|
email: gem-dev@curoverse.com
|
183
183
|
executables:
|
184
184
|
- arv
|