arvados-cli 0.1.20140911150141 → 0.1.20140912094334
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- checksums.yaml +4 -4
- data/bin/arv-run-pipeline-instance +10 -1
- data/bin/crunch-job +6 -0
- metadata +3 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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|
1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 9f450bcadc56008219090701049a17b5190f3f2d
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4
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+
data.tar.gz: 1c07a8e7ff91d4bfdf05d56f0de736ee4f7d0272
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: a0021ee1bb302b18d8740dc1c0c8515e427f5d968473cdd65ef6bbe5b704bc5a2a9cb7106cc69c205b6fdea71c71dade1fdcf0c568a072ad6b10661e9889677d
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7
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+
data.tar.gz: 3f216f4e56093890fd2124fc1ca83580a73b7bb410175dc39fb9fcb7360eec52ef3c5b6e384837848bf99e56dd77f0a7a51dcecfda208355b59cf36d981c3b9d
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@@ -495,6 +495,10 @@ class WhRunPipelineInstance
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495
495
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moretodo = true
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496
496
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interrupted = false
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497
497
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|
498
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+
if @instance[:started_at].nil?
|
499
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+
@instance[:started_at] = Time.now
|
500
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+
end
|
501
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+
|
498
502
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job_creation_failed = 0
|
499
503
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while moretodo
|
500
504
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moretodo = false
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@@ -598,7 +602,7 @@ class WhRunPipelineInstance
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598
602
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owner_uuid: owner_uuid,
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599
603
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name: name,
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600
604
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portable_data_hash: collections.first[:portable_data_hash],
|
601
|
-
manifest_text: collections.first[:manifest_text]
|
605
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+
manifest_text: collections.first[:manifest_text]
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602
606
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}
|
603
607
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debuglog "Creating collection #{newcollection}", 0
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604
608
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newcollection_actual = $arv.collection.create collection: newcollection, ensure_unique_name: true
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@@ -679,6 +683,10 @@ class WhRunPipelineInstance
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|
679
683
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end
|
680
684
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end
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681
685
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|
686
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+
if @instance[:finished_at].nil? and ['Complete', 'Failed'].include? @instance[:state]
|
687
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+
@instance[:finished_at] = Time.now
|
688
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+
end
|
689
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+
|
682
690
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debuglog "pipeline instance state is #{@instance[:state]}"
|
683
691
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|
684
692
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# set components_summary
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@@ -742,6 +750,7 @@ class WhRunPipelineInstance
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|
742
750
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if ["New", "Ready", "RunningOnClient",
|
743
751
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"RunningOnServer"].include?(@instance[:state])
|
744
752
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@instance[:state] = "Failed"
|
753
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+
@instance[:finished_at] = Time.now
|
745
754
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@instance.save
|
746
755
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end
|
747
756
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@instance.log_stderr(msg)
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data/bin/crunch-job
CHANGED
@@ -74,6 +74,7 @@ behavior (e.g., cancel job if cancelled_at becomes non-nil).
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|
74
74
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|
75
75
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use strict;
|
76
76
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use POSIX ':sys_wait_h';
|
77
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+
use POSIX qw(strftime);
|
77
78
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use Fcntl qw(F_GETFL F_SETFL O_NONBLOCK);
|
78
79
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use Arvados;
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79
80
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use Digest::MD5 qw(md5_hex);
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@@ -729,6 +730,9 @@ for (my $todo_ptr = 0; $todo_ptr <= $#jobstep_todo; $todo_ptr ++)
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729
730
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delete $Jobstep->{stderr};
|
730
731
|
delete $Jobstep->{finishtime};
|
731
732
|
|
733
|
+
$Jobstep->{'arvados_task'}->{started_at} = strftime "%Y-%m-%dT%H:%M:%SZ", gmtime($Jobstep->{starttime});
|
734
|
+
$Jobstep->{'arvados_task'}->save;
|
735
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+
|
732
736
|
splice @jobstep_todo, $todo_ptr, 1;
|
733
737
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--$todo_ptr;
|
734
738
|
|
@@ -979,6 +983,8 @@ sub reapchildren
|
|
979
983
|
}
|
980
984
|
$Jobstep->{exitcode} = $childstatus;
|
981
985
|
$Jobstep->{finishtime} = time;
|
986
|
+
$Jobstep->{'arvados_task'}->{finished_at} = strftime "%Y-%m-%dT%H:%M:%SZ", gmtime($Jobstep->{finishtime});
|
987
|
+
$Jobstep->{'arvados_task'}->save;
|
982
988
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process_stderr ($jobstepid, $task_success);
|
983
989
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Log ($jobstepid, "output " . $Jobstep->{'arvados_task'}->{output});
|
984
990
|
|
metadata
CHANGED
@@ -1,14 +1,14 @@
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|
1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: arvados-cli
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
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+
version: 0.1.20140912094334
|
5
5
|
platform: ruby
|
6
6
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authors:
|
7
7
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- Arvados Authors
|
8
8
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autorequire:
|
9
9
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bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2014-09-
|
11
|
+
date: 2014-09-12 00:00:00.000000000 Z
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12
12
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dependencies:
|
13
13
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- !ruby/object:Gem::Dependency
|
14
14
|
name: arvados
|
@@ -166,7 +166,7 @@ dependencies:
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|
166
166
|
- - "<"
|
167
167
|
- !ruby/object:Gem::Version
|
168
168
|
version: 1.0.0
|
169
|
-
description: This is the Arvados SDK CLI gem, git revision
|
169
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+
description: This is the Arvados SDK CLI gem, git revision ac594f16176901b7692be354045226e093b14218
|
170
170
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email: gem-dev@curoverse.com
|
171
171
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executables:
|
172
172
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- arv
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