arvados-cli 0.1.20140707150129 → 0.1.20140707162447

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
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-  data.tar.gz: 6cc4a3b6c21a413e7c386bb8293437fb0ae0fddf
+  metadata.gz: c79405a5f254faac3891203c0c77acbd58a58567
+  data.tar.gz: 8f8e9ae749e339a1f9997c345d0adb2f4d851448
 SHA512:
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+  metadata.gz: c8a4083c47903003d0eaa0537023592f257459b7cf694b220f329ca3b72fae60d7896bdc4137558e33453bb36bc44c83757d6430705ce6ec6c080190c473cc3e
+  data.tar.gz: ba368e1c1a4b70187867b771886975b279039f0fb8e23f7a7fd3ea842045301c9b23d1dc1d4ad98153ac1c9b409e691a86e5924a39ab19fc5edaf931b4898ec0

data/bin/arv-run-pipeline-instance

@@ -322,18 +322,13 @@ class JobCache
       []
     end
   end
-  def self.create(job, create_params)
+  def self.create(pipeline, component, job, create_params)
     @cache ||= {}
 
-    jsonified_create_params = {}
-    create_params.each do |k, v|
-      jsonified_create_params[k] = v.to_json unless v.nil?
-    end
+    body = { :job => job }.merge(create_params.select { |k,v| not v.nil? })
 
     result = $client.execute(:api_method => $arvados.jobs.create,
-                             :body => {
-                               :job => job.to_json
-                             }.merge(jsonified_create_params),
+                             :body => body,
                              :authenticated => false,
                              :headers => {
                                authorization: 'OAuth2 '+ENV['ARVADOS_API_TOKEN']
@@ -342,7 +337,27 @@ class JobCache
     if j.is_a? Hash and j[:uuid]
       @cache[j[:uuid]] = j
     else
-      debuglog "create job: #{j[:errors] rescue nil} with attributes #{job}", 0
+      debuglog "create job: #{j[:errors] rescue nil} with attributes #{body}", 0
+
+      msg = ""
+      j[:errors].each do |err|
+        msg += "Error creating job for component #{component}: #{err}\n"
+      end
+      msg += "Job submission was: #{body.to_json}"
+
+      $client.execute(:api_method => $arvados.logs.create,
+                      :body => {
+                        :log => {
+                          :object_uuid => pipeline[:uuid],
+                          :event_type => 'stderr',
+                          :owner_uuid => pipeline[:owner_uuid],
+                          :properties => {"text" => msg}
+                        }
+                      },
+                      :authenticated => false,
+                      :headers => {
+                        authorization: 'OAuth2 '+ENV['ARVADOS_API_TOKEN']
+                      })
       nil
     end
   end
@@ -468,7 +483,7 @@ class WhRunPipelineInstance
           # No job yet associated with this component and is component inputs
           # are fully specified (any output_of script_parameters are resolved
           # to real value)
-          job = JobCache.create({
+          job = JobCache.create(@instance, cname, {
             :script => c[:script],
             :script_parameters => c[:script_parameters],
             :script_version => c[:script_version],

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: arvados-cli
 version: !ruby/object:Gem::Version
-  version: 0.1.20140707150129
+  version: 0.1.20140707162447
 platform: ruby
 authors:
 - Arvados Authors
@@ -166,7 +166,7 @@ dependencies:
     - - "<"
       - !ruby/object:Gem::Version
         version: 1.0.0
-description: This is the Arvados SDK CLI gem, git revision 9e24edb1d9624b6aed38464c70cab5027586abbc
+description: This is the Arvados SDK CLI gem, git revision ea1a5e8a4e5370dde8fc10ac3889b81053b11187
 email: gem-dev@curoverse.com
 executables:
 - arv