arvados-cli 0.1.20140508132447 → 0.1.20140509041244

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: d0b625126b0539a5c8c878c0aaeeb211508c1573
-  data.tar.gz: 2930818b533aeb33c97c692980ce8631c03bc9c7
+  metadata.gz: 5ad7594634176db11a17d4c7635960785fe02e08
+  data.tar.gz: 7c4eb86160833339988f7cc70d4d80bc7621c3fd
 SHA512:
-  metadata.gz: 6ee01641003f4828d5f0f4e114b577410dbfe1df61b89b199eb46838a997427725a971a1015983312da0f0c9ff62e27a267d7298ae6c9c761264553e68ae0140
-  data.tar.gz: 26e344439c946ab0318feef5370215b8c894f66725a8f14b3f72c48fca0c21851c6e990a7a9b49cbbb5d9789fa1066bd9f9853167e18afe03e65f96210d92918
+  metadata.gz: c5097bc964f2a120b645133d5d6913efdaf39e301c8b0fcc3101c89795cccf0dc6bbe27e6eda2ef9ef6b43584fbcf85486dd294169441b571fbdc059386a2259
+  data.tar.gz: b4efc09da3ae1b1e1fd9a104027711d1fb15b0555ec79da47cae117be3244a59d59f109ecfa66f8878ee475817dc8920798ec1efebb442ddd8c4d4e2485a6b89

data/bin/arv-run-pipeline-instance

@@ -413,15 +413,24 @@ class WhRunPipelineInstance
   end
 
   def setup_instance
-    @instance ||= PipelineInstance.
-      create(:components => @components,
+    if $options[:submit]
+      @instance ||= PipelineInstance.
+        create(:components => @components,
+              :pipeline_template_uuid => @template[:uuid],
+              :state => 'New')
+    else
+      @instance ||= PipelineInstance.
+        create(:components => @components,
              :pipeline_template_uuid => @template[:uuid],
-             :active => true)
+             :state => 'RunningOnClient')
+    end
     self
   end
 
   def run
     moretodo = true
+    interrupted = false
+
     while moretodo
       moretodo = false
       @components.each do |cname, c|
@@ -544,7 +553,9 @@ class WhRunPipelineInstance
           sleep 10
         rescue Interrupt
           debuglog "interrupt", 0
-          abort
+          interrupted = true
+          break
+          #abort
         end
       end
     end
@@ -565,11 +576,30 @@ class WhRunPipelineInstance
       end
     end
 
-    if ended == @components.length or failed > 0
-      @instance[:active] = false
-      @instance[:success] = (succeeded == @components.length)
+    success = (succeeded == @components.length)
+
+    if interrupted
+     if success
+        @instance[:active] = false
+        @instance[:success] = success
+        @instance[:state] = "Complete"
+     else
+        @instance[:active] = nil
+        @instance[:success] = nil
+        @instance[:state] = 'Paused'
+      end
+    else
+      if ended == @components.length or failed > 0
+        @instance[:active] = false
+        @instance[:success] = success
+        @instance[:state] = success ? "Complete" : "Failed"
+      end
     end
 
+    # set components_summary
+    components_summary = {"todo" => @components.length - ended, "done" => succeeded, "failed" => failed}
+    @instance[:components_summary] = components_summary
+
     @instance.save
   end
 

data/bin/crunch-job

@@ -1296,6 +1296,7 @@ sub save_meta
       . quotemeta($local_logfile->filename);
   my $loglocator = `$cmd`;
   die "system $cmd failed: $?" if $?;
+  chomp($loglocator);
 
   $local_logfile = undef;   # the temp file is automatically deleted
   Log (undef, "log manifest is $loglocator");

metadata

@@ -1,152 +1,152 @@
 --- !ruby/object:Gem::Specification
 name: arvados-cli
 version: !ruby/object:Gem::Version
-  version: 0.1.20140508132447
+  version: 0.1.20140509041244
 platform: ruby
 authors:
 - Arvados Authors
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-05-08 00:00:00.000000000 Z
+date: 2014-05-09 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: arvados
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: 0.1.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: 0.1.0
 - !ruby/object:Gem::Dependency
   name: google-api-client
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: 0.6.3
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: 0.6.3
 - !ruby/object:Gem::Dependency
   name: activesupport
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '3.2'
-    - - '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 3.2.13
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '3.2'
-    - - '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 3.2.13
 - !ruby/object:Gem::Dependency
   name: json
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '1.7'
-    - - '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 1.7.7
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '1.7'
-    - - '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 1.7.7
 - !ruby/object:Gem::Dependency
   name: trollop
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '2.0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '2.0'
 - !ruby/object:Gem::Dependency
   name: andand
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '1.3'
-    - - '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 1.3.3
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '1.3'
-    - - '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 1.3.3
 - !ruby/object:Gem::Dependency
   name: oj
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '2.0'
-    - - '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 2.0.3
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '2.0'
-    - - '>='
+    - - ">="
       - !ruby/object:Gem::Version
         version: 2.0.3
 - !ruby/object:Gem::Dependency
   name: curb
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '0.8'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '0.8'
-description: This is the Arvados SDK CLI gem, git revision 16af0b22def5b80a1861788907a2fc45b14e3273
+description: This is the Arvados SDK CLI gem, git revision 179c431787943f3711f2127d127c33a831378b06
 email: gem-dev@curoverse.com
 executables:
 - arv
@@ -171,17 +171,17 @@ require_paths:
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement
   requirements:
-  - - '>='
+  - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
-  - - '>='
+  - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.2.1
+rubygems_version: 2.2.2
 signing_key: 
 specification_version: 4
 summary: Arvados SDK CLI