arvados-cli 0.1.20140425100736 → 0.1.20140425125602
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- checksums.yaml +4 -4
- data/bin/arv-run-pipeline-instance +25 -13
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 6351840df801def389676433741b47fc9570487f
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4
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+
data.tar.gz: 52d36f4542bb029a7a976d113dc69e35d6158d2c
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 34aea3f55d930446c5825ec5aad474690a8ebf86849a558ee62948f1428398fc9f3738c1dc91cd2c1493470d280cd6c80cf7ec052f0cf0bc8bd1923ea8d3d7ee
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7
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+
data.tar.gz: 6ce4b6c1c68d9feb26045f55ff461de96851c85e318d493e3d909878d8462116322a86e73694e84bfda0737d1d3b3c493b733f5a0687b9c9a2fc16d4702a1510
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@@ -312,19 +312,19 @@ class JobCache
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312
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[]
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313
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end
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end
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315
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-
def self.create(
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315
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+
def self.create(job, create_params)
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316
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@cache ||= {}
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317
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result = $client.execute(:api_method => $arvados.jobs.create,
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318
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:parameters => {
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:api_token => ENV['ARVADOS_API_TOKEN'],
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320
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-
:job =>
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321
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-
},
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320
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+
:job => job.to_json
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321
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+
}.merge(create_params),
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:authenticated => false)
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j = JSON.parse result.body, :symbolize_names => true
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if j.is_a? Hash and j[:uuid]
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@cache[j[:uuid]] = j
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326
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else
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327
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-
debuglog "create job: #{j[:errors] rescue nil} with
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327
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+
debuglog "create job: #{j[:errors] rescue nil} with attributes #{job}", 0
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nil
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329
329
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end
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end
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@@ -437,15 +437,27 @@ class WhRunPipelineInstance
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437
437
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# No job yet associated with this component and is component inputs
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# are fully specified (any output_of script_parameters are resolved
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439
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# to real value)
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440
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-
job = JobCache.create
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441
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-
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442
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-
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443
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-
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444
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-
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445
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-
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446
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-
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447
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-
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448
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-
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440
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+
job = JobCache.create {
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441
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+
:script => c[:script],
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442
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+
:script_parameters => c[:script_parameters],
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443
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+
:script_version => c[:script_version],
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444
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+
:repository => c[:repository],
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445
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+
:nondeterministic => c[:nondeterministic],
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446
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+
:output_is_persistent => c[:output_is_persistent] || false,
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447
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+
# TODO: Delete the following three attributes when
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448
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+
# supporting pre-20140418 API servers is no longer
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449
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+
# important. New API servers take these as flags that
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450
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+
# control behavior of create, rather than job attributes.
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451
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+
:minimum_script_version => c[:minimum_script_version],
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452
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+
:exclude_script_versions => c[:exclude_minimum_script_versions],
|
453
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+
:no_reuse => @options[:no_reuse] || c[:nondeterministic],
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454
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+
}, {
|
455
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+
# This is the right place to put these attributes when
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456
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# dealing with new API servers.
|
457
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+
:minimum_script_version => c[:minimum_script_version],
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458
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+
:exclude_script_versions => c[:exclude_minimum_script_versions],
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459
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+
:find_or_create => !(@options[:no_reuse] || c[:nondeterministic]),
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460
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+
}
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449
461
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if job
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450
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debuglog "component #{cname} new job #{job[:uuid]}"
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c[:job] = job
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metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
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name: arvados-cli
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3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.1.
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4
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+
version: 0.1.20140425125602
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5
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platform: ruby
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6
6
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authors:
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7
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- Arvados Authors
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@@ -146,7 +146,7 @@ dependencies:
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146
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- - ~>
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- !ruby/object:Gem::Version
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version: '0.8'
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149
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-
description: This is the Arvados SDK CLI gem, git revision
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149
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+
description: This is the Arvados SDK CLI gem, git revision 6d2128ae15825ef03472897e09710b176e3cc1d9
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email: gem-dev@curoverse.com
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executables:
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152
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- arv
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