arvados-cli 0.1.20131210143944 → 0.1.20131212092848
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- checksums.yaml +4 -4
- data/bin/crunch-job +14 -7
- metadata +3 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 36df8ebef84cf051f379ac5a6a6b5af046c05f56
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4
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+
data.tar.gz: 4ce7491264c103239c91fe32ce0ebebb0d2b65a2
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: d128b81c73238652be314df89814fad01ea2ed01af72d4707994480bcf45faa46ba549749b97df3debe6ff703b85022b35b584832ad3fa5153396d49a27a9428
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7
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+
data.tar.gz: 403f2e4d70b2c565d22b07fbeca1a221ae6b77a72254cf10a6e90449aafb43714bc6613eeeab2baef42b1408c47cc2273415b3098cd109171e805e421d57a2ec
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data/bin/crunch-job
CHANGED
@@ -120,9 +120,7 @@ $SIG{'USR2'} = sub
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120
120
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121
121
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122
122
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my $arv = Arvados->new;
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123
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-
my $metastream
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124
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-
$metastream->clear;
|
125
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-
$metastream->write_start('log.txt');
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123
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+
my $metastream;
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126
124
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127
125
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my $User = $arv->{'users'}->{'current'}->execute;
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128
126
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@@ -167,6 +165,10 @@ else
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167
165
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}
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168
166
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$job_id = $Job->{'uuid'};
|
169
167
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|
168
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+
$metastream = Warehouse::Stream->new(whc => new Warehouse);
|
169
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+
$metastream->clear;
|
170
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+
$metastream->name('.');
|
171
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+
$metastream->write_start($job_id . '.log.txt');
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170
172
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171
173
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172
174
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$Job->{'runtime_constraints'} ||= {};
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@@ -339,13 +341,13 @@ else
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339
341
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Log (undef, "Install revision ".$Job->{script_version});
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340
342
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my $nodelist = join(",", @node);
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341
343
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|
342
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-
# Clean out crunch_tmp/work
|
344
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+
# Clean out crunch_tmp/work, crunch_tmp/opt, crunch_tmp/src
|
343
345
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|
344
346
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my $cleanpid = fork();
|
345
347
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if ($cleanpid == 0)
|
346
348
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{
|
347
349
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srun (["srun", "--nodelist=$nodelist", "-D", $ENV{'TMPDIR'}],
|
348
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-
['bash', '-c', 'if mount | grep -q $JOB_WORK/; then sudo /bin/umount $JOB_WORK/* 2>/dev/null; fi; sleep 1; rm -rf $JOB_WORK $CRUNCH_TMP/opt']);
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350
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+
['bash', '-c', 'if mount | grep -q $JOB_WORK/; then sudo /bin/umount $JOB_WORK/* 2>/dev/null; fi; sleep 1; rm -rf $JOB_WORK $CRUNCH_TMP/opt $CRUNCH_TMP/src']);
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349
351
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exit (1);
|
350
352
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}
|
351
353
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while (1)
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@@ -1166,9 +1168,14 @@ sub save_meta
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|
1166
1168
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my $m = $metastream;
|
1167
1169
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$m = $m->copy if $justcheckpoint;
|
1168
1170
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$m->write_finish;
|
1169
|
-
my $
|
1171
|
+
my $whc = Warehouse->new;
|
1172
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+
my $loglocator = $whc->store_block ($m->as_string);
|
1173
|
+
$arv->{'collections'}->{'create'}->execute('collection' => {
|
1174
|
+
'uuid' => $loglocator,
|
1175
|
+
'manifest_text' => $m->as_string,
|
1176
|
+
});
|
1170
1177
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undef $metastream if !$justcheckpoint; # otherwise Log() will try to use it
|
1171
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-
Log (undef, "
|
1178
|
+
Log (undef, "log manifest is $loglocator");
|
1172
1179
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$Job->{'log'} = $loglocator;
|
1173
1180
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$Job->update_attributes('log', $loglocator) if $job_has_uuid;
|
1174
1181
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}
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metadata
CHANGED
@@ -1,14 +1,14 @@
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|
1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: arvados-cli
|
3
3
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version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
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+
version: 0.1.20131212092848
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Arvados Authors
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8
8
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autorequire:
|
9
9
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bindir: bin
|
10
10
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cert_chain: []
|
11
|
-
date: 2013-12-
|
11
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+
date: 2013-12-12 00:00:00.000000000 Z
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12
12
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dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
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name: google-api-client
|
@@ -94,7 +94,7 @@ dependencies:
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|
94
94
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- - '>='
|
95
95
|
- !ruby/object:Gem::Version
|
96
96
|
version: 2.0.3
|
97
|
-
description: This is the Arvados SDK CLI gem, git revision
|
97
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+
description: This is the Arvados SDK CLI gem, git revision 4a05680dd6991129385046ce646c32e1b595055a
|
98
98
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email: gem-dev@clinicalfuture.com
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99
99
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executables:
|
100
100
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- arv
|