arvados-cli 0.1.20130718170718 → 0.1.20130730143934
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- data/bin/arv +2 -2
- data/bin/arv-run-pipeline-instance +8 -1
- metadata +95 -111
data/bin/arv
CHANGED
@@ -138,7 +138,7 @@ def parse_arguments(discovery_document)
|
|
138
138
|
discovered_params.each do |k,v|
|
139
139
|
opts = Hash.new()
|
140
140
|
opts[:type] = v["type"].to_sym if v.include?("type")
|
141
|
-
if [:datetime, :text, :object].index opts[:type]
|
141
|
+
if [:datetime, :text, :object, :array].index opts[:type]
|
142
142
|
opts[:type] = :string # else trollop bork
|
143
143
|
end
|
144
144
|
opts[:default] = v["default"] if v.include?("default")
|
@@ -151,7 +151,7 @@ def parse_arguments(discovery_document)
|
|
151
151
|
end
|
152
152
|
end
|
153
153
|
discovered_params.each do |k,v|
|
154
|
-
if v["type"]
|
154
|
+
if ['object', 'array'].index(v["type"]) and method_opts.has_key? k
|
155
155
|
method_opts[k] = JSON.parse method_opts[k]
|
156
156
|
end
|
157
157
|
end
|
@@ -483,7 +483,14 @@ class WhRunPipelineInstance
|
|
483
483
|
@instance[:components] = @components
|
484
484
|
@instance[:active] = moretodo
|
485
485
|
report_status
|
486
|
-
|
486
|
+
if moretodo
|
487
|
+
begin
|
488
|
+
sleep 10
|
489
|
+
rescue Interrupt
|
490
|
+
debuglog "interrupt", 0
|
491
|
+
abort
|
492
|
+
end
|
493
|
+
end
|
487
494
|
end
|
488
495
|
@instance[:success] = @components.reject { |cname,c| c[:job] and c[:job][:success] }.empty?
|
489
496
|
@instance.save
|
metadata
CHANGED
@@ -1,161 +1,145 @@
|
|
1
|
-
--- !ruby/object:Gem::Specification
|
1
|
+
--- !ruby/object:Gem::Specification
|
2
2
|
name: arvados-cli
|
3
|
-
version: !ruby/object:Gem::Version
|
4
|
-
|
3
|
+
version: !ruby/object:Gem::Version
|
4
|
+
version: 0.1.20130730143934
|
5
5
|
prerelease:
|
6
|
-
segments:
|
7
|
-
- 0
|
8
|
-
- 1
|
9
|
-
- 20130718170718
|
10
|
-
version: 0.1.20130718170718
|
11
6
|
platform: ruby
|
12
|
-
authors:
|
7
|
+
authors:
|
13
8
|
- Arvados Authors
|
14
9
|
autorequire:
|
15
10
|
bindir: bin
|
16
11
|
cert_chain: []
|
17
|
-
|
18
|
-
|
19
|
-
|
20
|
-
- !ruby/object:Gem::Dependency
|
12
|
+
date: 2013-07-30 00:00:00.000000000 Z
|
13
|
+
dependencies:
|
14
|
+
- !ruby/object:Gem::Dependency
|
21
15
|
name: google-api-client
|
22
|
-
|
23
|
-
requirement: &id001 !ruby/object:Gem::Requirement
|
16
|
+
requirement: !ruby/object:Gem::Requirement
|
24
17
|
none: false
|
25
|
-
requirements:
|
26
|
-
- -
|
27
|
-
- !ruby/object:Gem::Version
|
28
|
-
hash: 1
|
29
|
-
segments:
|
30
|
-
- 0
|
31
|
-
- 6
|
32
|
-
- 3
|
18
|
+
requirements:
|
19
|
+
- - ! '>='
|
20
|
+
- !ruby/object:Gem::Version
|
33
21
|
version: 0.6.3
|
34
22
|
type: :runtime
|
35
|
-
version_requirements: *id001
|
36
|
-
- !ruby/object:Gem::Dependency
|
37
|
-
name: activesupport
|
38
23
|
prerelease: false
|
39
|
-
|
24
|
+
version_requirements: !ruby/object:Gem::Requirement
|
25
|
+
none: false
|
26
|
+
requirements:
|
27
|
+
- - ! '>='
|
28
|
+
- !ruby/object:Gem::Version
|
29
|
+
version: 0.6.3
|
30
|
+
- !ruby/object:Gem::Dependency
|
31
|
+
name: activesupport
|
32
|
+
requirement: !ruby/object:Gem::Requirement
|
40
33
|
none: false
|
41
|
-
requirements:
|
42
|
-
- -
|
43
|
-
- !ruby/object:Gem::Version
|
44
|
-
hash: 21
|
45
|
-
segments:
|
46
|
-
- 3
|
47
|
-
- 2
|
48
|
-
- 13
|
34
|
+
requirements:
|
35
|
+
- - ! '>='
|
36
|
+
- !ruby/object:Gem::Version
|
49
37
|
version: 3.2.13
|
50
38
|
type: :runtime
|
51
|
-
version_requirements: *id002
|
52
|
-
- !ruby/object:Gem::Dependency
|
53
|
-
name: json
|
54
39
|
prerelease: false
|
55
|
-
|
40
|
+
version_requirements: !ruby/object:Gem::Requirement
|
56
41
|
none: false
|
57
|
-
requirements:
|
58
|
-
- -
|
59
|
-
- !ruby/object:Gem::Version
|
60
|
-
|
61
|
-
|
62
|
-
|
63
|
-
|
64
|
-
|
42
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+
requirements:
|
43
|
+
- - ! '>='
|
44
|
+
- !ruby/object:Gem::Version
|
45
|
+
version: 3.2.13
|
46
|
+
- !ruby/object:Gem::Dependency
|
47
|
+
name: json
|
48
|
+
requirement: !ruby/object:Gem::Requirement
|
49
|
+
none: false
|
50
|
+
requirements:
|
51
|
+
- - ! '>='
|
52
|
+
- !ruby/object:Gem::Version
|
65
53
|
version: 1.7.7
|
66
54
|
type: :runtime
|
67
|
-
version_requirements: *id003
|
68
|
-
- !ruby/object:Gem::Dependency
|
69
|
-
name: trollop
|
70
55
|
prerelease: false
|
71
|
-
|
56
|
+
version_requirements: !ruby/object:Gem::Requirement
|
72
57
|
none: false
|
73
|
-
requirements:
|
74
|
-
- -
|
75
|
-
- !ruby/object:Gem::Version
|
76
|
-
|
77
|
-
|
78
|
-
|
79
|
-
|
80
|
-
|
58
|
+
requirements:
|
59
|
+
- - ! '>='
|
60
|
+
- !ruby/object:Gem::Version
|
61
|
+
version: 1.7.7
|
62
|
+
- !ruby/object:Gem::Dependency
|
63
|
+
name: trollop
|
64
|
+
requirement: !ruby/object:Gem::Requirement
|
65
|
+
none: false
|
66
|
+
requirements:
|
67
|
+
- - ! '>='
|
68
|
+
- !ruby/object:Gem::Version
|
69
|
+
version: '2.0'
|
81
70
|
type: :runtime
|
82
|
-
version_requirements: *id004
|
83
|
-
- !ruby/object:Gem::Dependency
|
84
|
-
name: andand
|
85
71
|
prerelease: false
|
86
|
-
|
72
|
+
version_requirements: !ruby/object:Gem::Requirement
|
73
|
+
none: false
|
74
|
+
requirements:
|
75
|
+
- - ! '>='
|
76
|
+
- !ruby/object:Gem::Version
|
77
|
+
version: '2.0'
|
78
|
+
- !ruby/object:Gem::Dependency
|
79
|
+
name: andand
|
80
|
+
requirement: !ruby/object:Gem::Requirement
|
87
81
|
none: false
|
88
|
-
requirements:
|
89
|
-
- -
|
90
|
-
- !ruby/object:Gem::Version
|
91
|
-
hash: 29
|
92
|
-
segments:
|
93
|
-
- 1
|
94
|
-
- 3
|
95
|
-
- 3
|
82
|
+
requirements:
|
83
|
+
- - ! '>='
|
84
|
+
- !ruby/object:Gem::Version
|
96
85
|
version: 1.3.3
|
97
86
|
type: :runtime
|
98
|
-
version_requirements: *id005
|
99
|
-
- !ruby/object:Gem::Dependency
|
100
|
-
name: oj
|
101
87
|
prerelease: false
|
102
|
-
|
88
|
+
version_requirements: !ruby/object:Gem::Requirement
|
103
89
|
none: false
|
104
|
-
requirements:
|
105
|
-
- -
|
106
|
-
- !ruby/object:Gem::Version
|
107
|
-
|
108
|
-
|
109
|
-
|
110
|
-
|
111
|
-
|
90
|
+
requirements:
|
91
|
+
- - ! '>='
|
92
|
+
- !ruby/object:Gem::Version
|
93
|
+
version: 1.3.3
|
94
|
+
- !ruby/object:Gem::Dependency
|
95
|
+
name: oj
|
96
|
+
requirement: !ruby/object:Gem::Requirement
|
97
|
+
none: false
|
98
|
+
requirements:
|
99
|
+
- - ! '>='
|
100
|
+
- !ruby/object:Gem::Version
|
112
101
|
version: 2.0.3
|
113
102
|
type: :runtime
|
114
|
-
|
115
|
-
|
103
|
+
prerelease: false
|
104
|
+
version_requirements: !ruby/object:Gem::Requirement
|
105
|
+
none: false
|
106
|
+
requirements:
|
107
|
+
- - ! '>='
|
108
|
+
- !ruby/object:Gem::Version
|
109
|
+
version: 2.0.3
|
110
|
+
description: This is the Arvados SDK CLI gem, git revision 5fcebaf9f4c05cf63f2cfa6d69b5bf16e0a73b96
|
116
111
|
email: gem-dev@clinicalfuture.com
|
117
|
-
executables:
|
112
|
+
executables:
|
118
113
|
- arv
|
119
114
|
- arv-run-pipeline-instance
|
120
115
|
extensions: []
|
121
|
-
|
122
116
|
extra_rdoc_files: []
|
123
|
-
|
124
|
-
files:
|
117
|
+
files:
|
125
118
|
- bin/arv
|
126
119
|
- bin/arv-run-pipeline-instance
|
127
120
|
homepage: http://arvados.org
|
128
|
-
licenses:
|
121
|
+
licenses:
|
129
122
|
- Apache License, Version 2.0
|
130
123
|
post_install_message:
|
131
124
|
rdoc_options: []
|
132
|
-
|
133
|
-
require_paths:
|
125
|
+
require_paths:
|
134
126
|
- lib
|
135
|
-
required_ruby_version: !ruby/object:Gem::Requirement
|
127
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
136
128
|
none: false
|
137
|
-
requirements:
|
138
|
-
- -
|
139
|
-
- !ruby/object:Gem::Version
|
140
|
-
|
141
|
-
|
142
|
-
- 0
|
143
|
-
version: "0"
|
144
|
-
required_rubygems_version: !ruby/object:Gem::Requirement
|
129
|
+
requirements:
|
130
|
+
- - ! '>='
|
131
|
+
- !ruby/object:Gem::Version
|
132
|
+
version: '0'
|
133
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
145
134
|
none: false
|
146
|
-
requirements:
|
147
|
-
- -
|
148
|
-
- !ruby/object:Gem::Version
|
149
|
-
|
150
|
-
segments:
|
151
|
-
- 0
|
152
|
-
version: "0"
|
135
|
+
requirements:
|
136
|
+
- - ! '>='
|
137
|
+
- !ruby/object:Gem::Version
|
138
|
+
version: '0'
|
153
139
|
requirements: []
|
154
|
-
|
155
140
|
rubyforge_project:
|
156
|
-
rubygems_version: 1.8.
|
141
|
+
rubygems_version: 1.8.25
|
157
142
|
signing_key:
|
158
143
|
specification_version: 3
|
159
144
|
summary: Arvados SDK CLI
|
160
145
|
test_files: []
|
161
|
-
|