apate 0.0.1

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data/.gitignore

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+/.bundle/
+/.yardoc
+/Gemfile.lock
+/_yardoc/
+/coverage/
+/doc/
+/pkg/
+/spec/reports/
+/tmp/
+*.bundle
+*.so
+*.o
+*.a
+mkmf.log

data/.travis.yml

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+language: ruby
+rvm:
+  - 1.9.3
+script: bundle exec rspec spec

data/.versions.conf

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+ruby=ruby-1.9.3-p392
+ruby-gemset=apate
+#ruby-gem-install=bundler rake
+#ruby-bundle-install=true

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in apate.gemspec
+gemspec

data/GuardFile

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+guard :rspec, cmd: "bundle exec rspec" do
+  watch(%r{^spec/.+_spec\.rb$})
+  watch(%r{^lib/(.+)\.rb$})     { |m| "spec/lib/#{m[1]}_spec.rb" }
+end

data/LICENSE.txt

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+Copyright (c) 2014 Albin Svensson
+
+MIT License
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.md

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+# Apate
+
+TODO: Write a gem description
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+```ruby
+gem 'apate'
+```
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install apate
+
+## Usage
+
+```ruby
+# compute variance
+Apate.variance arr
+# compute average of an array
+Apate.average arr
+```
+
+## Contributing
+
+1. Fork it ( https://github.com/[my-github-username]/apate/fork )
+2. Create your feature branch (`git checkout -b my-new-feature`)
+3. Commit your changes (`git commit -am 'Add some feature'`)
+4. Push to the branch (`git push origin my-new-feature`)
+5. Create a new Pull Request

data/Rakefile

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+require "bundler/gem_tasks"
+require "rspec/core/rake_task"
+
+RSpec::Core::RakeTask.new
+
+task :default => :spec
+task :test => :spec
+
+task :console do
+  require 'irb'
+  require 'irb/completion'
+  require 'apate'
+  ARGV.clear
+  IRB.start
+end

data/apate.gemspec

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+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'apate/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "apate"
+  spec.version       = Apate::VERSION
+  spec.authors       = ["Albin Svensson"]
+  spec.email         = ["albin.svensson@trialbee.com"]
+  spec.summary       = %q{Provide tools for statistics computation.}
+  spec.description   = %q{Provide tools to be used when making statistical computations.}
+  spec.homepage      = ""
+  spec.license       = "MIT"
+
+  spec.files         = `git ls-files -z`.split("\x0")
+  spec.executables   = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
+  spec.test_files    = spec.files.grep(%r{^(test|spec|features)/})
+  spec.require_paths = ["lib"]
+  
+  spec.add_development_dependency 'bundler',      '~> 1.5'
+  spec.add_development_dependency 'rake',         '~> 10.0'
+  spec.add_development_dependency 'rspec',        '~> 3.2'
+  spec.add_development_dependency 'simplecov',    '~> 0.7'
+  spec.add_development_dependency 'guard',        '~> 2.12'
+  spec.add_development_dependency 'guard-rspec',  '~> 4.5'
+
+end

data/lib/apate.rb

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+require "apate/version"
+require "apate/all_methods"
+
+module Apate
+end

data/lib/apate/all_methods.rb

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+require "apate/basic_methods"
+require "apate/multi_set_methods"
+require "apate/array_methods"
+require "apate/matrix_methods"
+
+module Apate
+
+end

data/lib/apate/array_methods.rb

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+module Apate
+
+  def self.subtract(element, value)
+    self.element_wise_computing(:-, element, value)
+  end
+
+  def self.add(element, value)
+    self.element_wise_computing(:+, element, value)
+  end
+
+  def self.multiply(element, value)
+    self.element_wise_computing(:*, element, value)
+  end
+
+  def self.divide(element, value)
+    self.element_wise_computing(:/, element, value.to_f)
+  end
+
+  def self.pow(element, value)
+    self.element_wise_computing(:**, element, value.to_f)
+  end
+
+
+  def self.scalar_product x, y
+    return unless x.length == y.length
+    value = 0
+
+    x.each_with_index do |xi, i|
+      value += xi*y[i]
+    end
+
+    value
+  end
+
+
+  private
+
+    def self.element_wise_computing method, elements, value
+      if elements.kind_of?(Array)
+        elements.map do |e|
+          self.element_wise_computing(method, e, value)
+        end
+      else
+        elements.send(method, value)
+      end
+    end
+
+end

data/lib/apate/basic_methods.rb

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+module Apate
+
+  def self.average arr
+    self.sum(arr).to_f / arr.length
+  end
+
+  def self.sum arr
+    arr.inject { |sum, el| sum + el }
+  end
+
+  def self.variance arr
+    m = self.average arr
+  
+    arr = self.subtract(arr, m)
+    self.scalar_product(arr, arr).to_f/(arr.length-1)
+  end
+
+  def self.median arr
+    sorted_arr = arr.sort
+    length = arr.length
+    if length % 2 == 0
+      self.average(sorted_arr[length/2-1..length/2])
+    else
+      sorted_arr[(length-1)/2]
+    end
+  end
+
+
+  def self.mode arr
+    freq = arr.inject(Hash.new(0)) { |h,v| h[v] += 1; h }
+    arr.max_by { |v| freq[v] }
+
+  end
+
+end

data/lib/apate/matrix_methods.rb

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+module Apate
+
+  def self.matrix_multiply(a, b)
+    am = Matrix.new(a)
+    bm = Matrix.new(b)
+
+    (am*bm).data
+  end
+
+  def self.matrix_add(a, b)
+    am = Matrix.new(a)
+    bm = Matrix.new(b)
+
+    (am+bm).data
+  end
+
+  def self.invert_matrix(a)
+    am = Matrix.new(a)
+    am.invert.data
+  end
+
+
+  def self.determinant(a)
+    am = Matrix.new(a)
+    det = am.determinant
+
+    det
+  end
+
+  class Matrix
+
+    def self.create_empty(rows, cols)
+      arr = Array.new(rows).map { |_| Array.new(cols) }
+      Matrix.new(arr)
+    end
+
+    def initialize(arr)
+      @rows = arr.length
+      @cols = arr[0].length
+      @data = arr
+    end
+
+    def data
+      @data
+    end
+
+    def data=(d)
+      @data = d
+    end
+
+    def rows
+      @rows
+    end
+
+    def cols
+      @cols
+    end
+
+    def set(row, col, value)
+      return nil if row >= @rows || col >= cols
+      @data[row][col] = value
+    end
+
+    def get(row, col)
+      @data[row][col]
+    end
+
+    def get_columns
+      columns = Array.new(cols).map { |_| Array.new(rows) }
+      data.each_with_index do |row, row_i|
+        row.each_with_index do |e, col_i|
+          columns[col_i][row_i] = e
+        end
+      end
+      columns
+    end
+
+    def +(b)
+      c = Matrix.create_empty rows, cols
+
+      data.each_with_index do |row, row_i|
+        b.get_columns.each_with_index do |col, col_i|
+          c.set(row_i, col_i, get(row_i, col_i) + b.get(row_i, col_i))
+        end
+      end
+      c
+    end
+
+    def *(b)
+      c = Matrix.create_empty rows, b.cols
+      data.each_with_index do |row, row_i|
+        b.get_columns.each_with_index do |col, col_i|
+          c.set(row_i, col_i, Apate.scalar_product(row, col))
+        end
+      end
+      c
+    end
+
+    def determinant
+      fail 'Non square matrix' unless rows == cols
+      return data[0][0] if rows == 1
+      det = 0
+
+      data.each_with_index do |_, row_i|
+        cell = get(row_i, 0)
+        next if cell == 0
+        b = get_sub_matrix_without_row_and_col0(row_i)
+        b_det = b.determinant
+        det += ((-1)**row_i)*cell*b_det
+      end
+      det
+    end
+
+    def get_sub_matrix_without_row_and_col0(row)
+      b = Matrix.create_empty rows-1, cols-1
+      ranges = get_range_pair rows, row
+      if ranges[:first] && ranges[:second]
+        b.data = sub_matrix(1..cols-1, ranges[:first])
+        b.append_cols(sub_matrix(1..cols-1, ranges[:second]))
+      elsif ranges[:first]
+        b.data = sub_matrix(1..cols-1, ranges[:first])
+      elsif ranges[:second]
+        b.data = sub_matrix(1..cols-1, ranges[:second])
+      end
+      b
+    end
+
+    def sub_matrix(col_range, row_range)
+      data[col_range].map { |c| c[row_range] }
+    end
+
+    def invert
+      ai = Matrix.create_empty rows, cols
+
+    end
+
+    def print
+      data.each do |row|
+        puts "| #{row.join(' | ')} |\n"
+        puts '-'*cols*3
+      end
+    end
+
+    def append_cols(append_data)
+      data.each_with_index do |row, i|
+        data[i] = row + append_data[i]
+      end
+    end
+
+    private
+
+      def get_range_pair(max, index)
+        return if max == 0 || index >= max
+        pair = {first: nil, second: nil}
+        real_max = max-1
+        if index == 0
+          pair[:second] = (1..real_max)
+        elsif index == (real_max)
+          pair[:first] = (0..real_max-1)
+        else
+          pair[:first] = (0..index-1)
+          pair[:second] = (index+1..real_max)
+        end
+        pair
+      end
+  end
+end

data/lib/apate/multi_set_methods.rb

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+module Apate
+
+  def self.covariance x, y
+    xl = x.length
+    yl = y.length
+
+    return unless xl == yl
+
+    xm = self.average x
+    ym = self.average y
+
+    self.scalar_product(self.subtract(x, xm), self.subtract(y, ym))/(xl.to_f - 1)
+  end
+
+end

data/lib/apate/version.rb

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+module Apate
+  VERSION = "0.0.1"
+end

data/spec/lib/apate/array_methods_spec.rb

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+require 'spec_helper'
+
+describe Apate do
+
+
+  it 'should be able to multiply 2 arrays' do
+    res = Apate.scalar_product [3,2,1], [3,2,1]
+    expect(res).to eq(14)
+  end
+
+  it 'should be able to subtract a value from an array' do
+    res = Apate.subtract [4,3,1], 1
+    expected = [3,2,0]
+
+    res.each_with_index do |r, i|
+      expect(r).to eq(expected[i])
+    end 
+
+  end
+
+  it 'should be able to add a value ta an array' do
+    res = Apate.add [4,3,1], 1
+    expected = [5,4,2]
+
+    res.each_with_index do |r, i|
+      expect(r).to eq(expected[i])
+    end 
+
+  end
+
+  it 'should be able to multiply an array with an scalar' do
+    res = Apate.multiply [4,3,1], 2
+    expected = [8,6,2]
+
+    res.each_with_index do |r, i|
+      expect(r).to eq(expected[i])
+    end 
+  end
+
+  it 'should be able to divide an array by an scalar' do
+    res = Apate.divide [4,3,1], 2
+    expected = [2,1.5,0.5]
+
+    res.each_with_index do |r, i|
+      expect(r).to eq(expected[i])
+    end 
+  end
+
+  it 'should be able to raise each element in an array to a power' do
+    res = Apate.pow [4,3,1], 2
+    expected = [16,9,1]
+
+    res.each_with_index do |r, i|
+      expect(r).to eq(expected[i])
+    end
+
+    res = Apate.pow [4,9,1], -1
+    expected = [1.0/4,1.0/9,1]
+
+    res.each_with_index do |r, i|
+      expect(r).to eq(expected[i])
+    end
+
+
+
+  end 
+
+
+end

data/spec/lib/apate/basic_methods_spec.rb

@@ -0,0 +1,64 @@
+require 'spec_helper'
+
+describe Apate do
+
+  it 'Should be able to compute the sum of an array' do
+    arr = [1,2,3,4,5]
+    res = Apate.sum(arr)
+    expect(res).to eq(15)
+
+    res = Apate.sum [3, 4]
+    expect(res).to eq(7)
+  end
+
+  it 'Should be able to compute the average of an array' do
+    arr = [1,2,3,4,5]
+    res = Apate.average(arr)
+    expect(res).to eq(3)
+
+    res = Apate.average [3, 4]
+    expect(res).to eq(3.5)
+  end
+
+  it 'Should be able to compute the median of an array' do
+    arr = [1,2,3,4,5]
+    res = Apate.median(arr)
+    expect(res).to eq(3)
+
+    res = Apate.median [2, 3, 4, 2]
+    expect(res).to eq(2.5)
+  end
+
+  describe 'estimate variance' do
+
+    it 'should be able to estimate variance in an array' do
+      res = Apate.variance [1, 2, 3, 4, 5]
+      expect(res).to eq(2.5)
+    end
+
+    it 'should return NaN if only one element in array' do
+      res = Apate.variance [1]
+      expect(res.nan?).to be_truthy
+    end
+  
+  end
+
+  describe 'mode' do
+    it 'should be able to find the most frequent number in an array' do
+      res = Apate.mode([1,1,1,2,2,3,4,5])
+      expect(res).to eq(1)
+    end
+
+
+    it 'should select the lowest number if there are the same number of occurenses' do
+      res = Apate.mode([1,1,2,2,3,4,5])
+      expect(res).to eq(1)
+    end
+
+    it 'should be able to handle negative numbers' do
+      res = Apate.mode([-1,-1,-2,-2,-3,-4,-5])
+      expect(res).to eq(-1)
+    end
+  end
+
+end

data/spec/lib/apate/matrix_methods_spec.rb

@@ -0,0 +1,78 @@
+require 'spec_helper'
+
+describe Apate do
+
+
+  it 'can multiply 2 1x1 matrices' do
+    a = [[2]]
+    b = [[3]]
+
+    res = Apate.matrix_multiply a, b
+
+    expect(res.length).to eq(1)
+    expect(res.first.length).to eq(1)
+    expect(res.first.first).to eq(6)
+  end
+
+  it 'can multiply 2 2x2 matrices' do
+    a = [[1,0], [0,1]]
+    b = [[1,2], [3,4]]
+
+    res = Apate.matrix_multiply a, b
+    expect(res.length).to eq(2)
+    expect(res.first.length).to eq(2)
+    expect(res).to eq(b)
+
+  end
+
+  # it 'can invert a matrix' do
+  #   a = [[1,2],[2,1]]
+
+  #   res = Apate.invert_matrix a
+
+  #   expected = [[1,0], [0,1]]
+
+  #   expect(res).to eq(expected)
+
+  # end
+  context 'determinants' do
+    it 'can compute the determinant of a eigenmatrix' do
+      a = [[1,0,0],[0,1,0],[0,0,1]]
+      res = Apate.determinant a
+      expect(res).to eq(1)
+    end
+
+    it 'can compute a negative determinant' do
+      a = [[0,1],[1,0]]
+      res = Apate.determinant a
+      expect(res).to eq(-1)
+
+      a = [[1,0,0],[0,0,1],[0,1,0]]
+      res = Apate.determinant a
+      expect(res).to eq(-1)
+    end
+
+    it 'can compute the determinant of a singular matrix' do
+      a = [[1,1,1],[1,1,1],[1,1,1]]
+      res = Apate.determinant a
+      expect(res).to eq(0)
+    end
+
+    it 'raises error if matrix is not square' do
+      a = [[1,1,1],[1,1,1]]
+      expect { Apate.determinant(a)}.to raise_error
+    end
+  end
+
+  it 'can add 2 2x2 matrices' do
+    a = [[1,0], [0,1]]
+    b = [[1,2], [3,4]]
+
+    c = [[2,2], [3,5]]
+
+    res = Apate.matrix_add a, b
+    expect(res.length).to eq(2)
+    expect(res.first.length).to eq(2)
+    expect(res).to eq(c)
+  end
+end

data/spec/lib/apate/multi_set_methods_spec.rb

@@ -0,0 +1,31 @@
+require 'spec_helper'
+
+describe Apate do
+
+
+  it 'should be able to compute the covariance between two arrays' do
+
+    arr1 = [1,2,3]
+    arr2 = [2,3,4]
+
+    expected = 1.0
+
+    c = Apate.covariance(arr1, arr2)
+
+    expect(c).to eq(expected)
+
+  end
+
+  it 'should return nil if the array lengths do not match' do
+
+    arr1 = [1,2,3]
+    arr2 = [2,3,4,2]
+
+    expected = nil
+
+    c = Apate.covariance(arr1, arr2)
+
+    expect(c).to eq(expected)
+  end
+
+end

data/spec/lib/apate_spec.rb

@@ -0,0 +1,6 @@
+require 'spec_helper'
+
+describe Apate do
+
+
+end

data/spec/spec_helper.rb

@@ -0,0 +1,5 @@
+$LOAD_PATH.unshift File.expand_path('../../lib', __FILE__)
+require 'simplecov'
+SimpleCov.start 'rails'
+
+require 'apate'

metadata

@@ -0,0 +1,156 @@
+--- !ruby/object:Gem::Specification
+name: apate
+version: !ruby/object:Gem::Version
+  version: 0.0.1
+platform: ruby
+authors:
+- Albin Svensson
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2015-04-27 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.5'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.5'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '10.0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '3.2'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '3.2'
+- !ruby/object:Gem::Dependency
+  name: simplecov
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '0.7'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '0.7'
+- !ruby/object:Gem::Dependency
+  name: guard
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '2.12'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '2.12'
+- !ruby/object:Gem::Dependency
+  name: guard-rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '4.5'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '4.5'
+description: Provide tools to be used when making statistical computations.
+email:
+- albin.svensson@trialbee.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- .gitignore
+- .travis.yml
+- .versions.conf
+- Gemfile
+- GuardFile
+- LICENSE.txt
+- README.md
+- Rakefile
+- apate.gemspec
+- lib/apate.rb
+- lib/apate/all_methods.rb
+- lib/apate/array_methods.rb
+- lib/apate/basic_methods.rb
+- lib/apate/matrix_methods.rb
+- lib/apate/multi_set_methods.rb
+- lib/apate/version.rb
+- spec/lib/apate/array_methods_spec.rb
+- spec/lib/apate/basic_methods_spec.rb
+- spec/lib/apate/matrix_methods_spec.rb
+- spec/lib/apate/multi_set_methods_spec.rb
+- spec/lib/apate_spec.rb
+- spec/spec_helper.rb
+homepage: ''
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.2.2
+signing_key: 
+specification_version: 4
+summary: Provide tools for statistics computation.
+test_files:
+- spec/lib/apate/array_methods_spec.rb
+- spec/lib/apate/basic_methods_spec.rb
+- spec/lib/apate/matrix_methods_spec.rb
+- spec/lib/apate/multi_set_methods_spec.rb
+- spec/lib/apate_spec.rb
+- spec/spec_helper.rb