anonymizer 0.1.0 → 0.1.1

data/.gitignore

@@ -0,0 +1,2 @@
+.DS_Store
+test/*

data/Rakefile

@@ -1,12 +1,30 @@
 require 'rubygems'
 require 'rake'
-require 'echoe'
-
-Echoe.new('anonymizer', '0.1.0') do |p|
-  p.description    = "Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like."
-  p.url            = "http://github.com/kjkosmatka/anonymizer"
-  p.author         = "Kristopher J. Kosmatka"
-  p.email          = "kk4@medicine.wisc.edu"
-  p.ignore_pattern = ["test/out*"]
-  p.development_dependencies = []
+
+begin
+  require 'jeweler'
+  Jeweler::Tasks.new do |gemspec|
+    gemspec.name = "anonymizer"
+    gemspec.summary = "Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like."
+    gemspec.description = "Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like."
+    gemspec.email = "kk4@medicine.wisc.edu"
+    gemspec.homepage = "http://github.com/brainmap/anonymizer"
+    gemspec.authors = ["Kristopher J. Kosmatka"]
+  end
+  Jeweler::GemcutterTasks.new
+rescue LoadError
+  puts "Jeweler not available. Install it with: sudo gem install jeweler"
 end
+
+
+
+
+
+#Echoe.new('anonymizer', '0.1.0') do |p|
+#  p.description    = "Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like."
+#  p.url            = "http://github.com/kjkosmatka/anonymizer"
+#  p.author         = "Kristopher J. Kosmatka"
+#  p.email          = "kk4@medicine.wisc.edu"
+#  p.ignore_pattern = ["test/out*"]
+#  p.development_dependencies = []
+#end

data/VERSION

@@ -0,0 +1 @@
+0.1.1

data/anonymizer.gemspec

@@ -1,66 +1,62 @@
---- !ruby/object:Gem::Specification 
-name: anonymizer
-version: !ruby/object:Gem::Version 
-  version: 0.1.0
-platform: ruby
-authors: 
-- Kristopher J. Kosmatka
-autorequire: 
-bindir: bin
-cert_chain: []
+# Generated by jeweler
+# DO NOT EDIT THIS FILE DIRECTLY
+# Instead, edit Jeweler::Tasks in Rakefile, and run the gemspec command
+# -*- encoding: utf-8 -*-
 
-date: 2009-08-13 02:00:00 -05:00
-default_executable: anonymize_data.rb
-dependencies: []
+Gem::Specification.new do |s|
+  s.name = %q{anonymizer}
+  s.version = "0.1.1"
 
-description: Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like.
-email: kk4@medicine.wisc.edu
-executables: 
-- anonymize_data.rb
-extensions: []
+  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.authors = ["Kristopher J. Kosmatka"]
+  s.date = %q{2009-12-10}
+  s.default_executable = %q{anonymize_data.rb}
+  s.description = %q{Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like.}
+  s.email = %q{kk4@medicine.wisc.edu}
+  s.executables = ["anonymize_data.rb"]
+  s.extra_rdoc_files = [
+    "README.rdoc"
+  ]
+  s.files = [
+    ".gitignore",
+     "Manifest",
+     "README.rdoc",
+     "Rakefile",
+     "VERSION",
+     "anonymizer-0.1.0.gem",
+     "anonymizer.gemspec",
+     "bin/anonymize_data.rb",
+     "doc/classes/Anonymizer.html",
+     "doc/classes/Anonymizer.src/M000003.html",
+     "doc/classes/Anonymizer.src/M000004.html",
+     "doc/classes/Anonymizer.src/M000005.html",
+     "doc/classes/Array.html",
+     "doc/classes/Array.src/M000001.html",
+     "doc/classes/Array.src/M000002.html",
+     "doc/created.rid",
+     "doc/files/bin/anonymize_data_rb.html",
+     "doc/files/lib/anonymizer_rb.html",
+     "doc/fr_class_index.html",
+     "doc/fr_file_index.html",
+     "doc/fr_method_index.html",
+     "doc/index.html",
+     "doc/rdoc-style.css",
+     "lib/anonymizer.rb"
+  ]
+  s.homepage = %q{http://github.com/brainmap/anonymizer}
+  s.rdoc_options = ["--charset=UTF-8"]
+  s.require_paths = ["lib"]
+  s.rubygems_version = %q{1.3.5}
+  s.summary = %q{Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like.}
 
-extra_rdoc_files: 
-- bin/anonymize_data.rb
-- lib/anonymizer.rb
-- README.rdoc
-files: 
-- anonymizer.gemspec
-- bin/anonymize_data.rb
-- lib/anonymizer.rb
-- Manifest
-- Rakefile
-- README.rdoc
-has_rdoc: true
-homepage: http://github.com/kjkosmatka/anonymizer
-licenses: 
-post_install_message: 
-rdoc_options: 
-- --line-numbers
-- --inline-source
-- --title
-- Anonymizer
-- --main
-- README.rdoc
-require_paths: 
-- lib
-required_ruby_version: !ruby/object:Gem::Requirement 
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      version: "0"
-  version: 
-required_rubygems_version: !ruby/object:Gem::Requirement 
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      version: "1.2"
-  version: 
-requirements: []
+  if s.respond_to? :specification_version then
+    current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
+    s.specification_version = 3
 
-rubyforge_project: anonymizer
-rubygems_version: 1.3.5
-signing_key: 
-specification_version: 2
-summary: Anonymizes a collection of files and/or directories for interrater reliabiliy analyses and the like.
-test_files: []
+    if Gem::Version.new(Gem::RubyGemsVersion) >= Gem::Version.new('1.2.0') then
+    else
+    end
+  else
+  end
+end
 

data/doc/classes/Anonymizer.html

@@ -0,0 +1,227 @@
+<?xml version="1.0" encoding="iso-8859-1"?>
+<!DOCTYPE html 
+     PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+     "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+<head>
+  <title>Class: Anonymizer</title>
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
+  <meta http-equiv="Content-Script-Type" content="text/javascript" />
+  <link rel="stylesheet" href=".././rdoc-style.css" type="text/css" media="screen" />
+  <script type="text/javascript">
+  // <![CDATA[
+
+  function popupCode( url ) {
+    window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
+  }
+
+  function toggleCode( id ) {
+    if ( document.getElementById )
+      elem = document.getElementById( id );
+    else if ( document.all )
+      elem = eval( "document.all." + id );
+    else
+      return false;
+
+    elemStyle = elem.style;
+    
+    if ( elemStyle.display != "block" ) {
+      elemStyle.display = "block"
+    } else {
+      elemStyle.display = "none"
+    }
+
+    return true;
+  }
+  
+  // Make codeblocks hidden by default
+  document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
+  
+  // ]]>
+  </script>
+
+</head>
+<body>
+
+
+
+    <div id="classHeader">
+        <table class="header-table">
+        <tr class="top-aligned-row">
+          <td><strong>Class</strong></td>
+          <td class="class-name-in-header">Anonymizer</td>
+        </tr>
+        <tr class="top-aligned-row">
+            <td><strong>In:</strong></td>
+            <td>
+                <a href="../files/lib/anonymizer_rb.html">
+                lib/anonymizer.rb
+                </a>
+        <br />
+            </td>
+        </tr>
+
+        <tr class="top-aligned-row">
+            <td><strong>Parent:</strong></td>
+            <td>
+                Object
+            </td>
+        </tr>
+        </table>
+    </div>
+  <!-- banner header -->
+
+  <div id="bodyContent">
+
+
+
+  <div id="contextContent">
+
+
+
+   </div>
+
+    <div id="method-list">
+      <h3 class="section-bar">Methods</h3>
+
+      <div class="name-list">
+      <a href="#M000004">anonymize</a>&nbsp;&nbsp;
+      <a href="#M000003">new</a>&nbsp;&nbsp;
+      <a href="#M000005">record_to</a>&nbsp;&nbsp;
+      </div>
+    </div>
+
+  </div>
+
+
+    <!-- if includes -->
+
+    <div id="section">
+
+
+
+
+
+    <div id="attribute-list">
+      <h3 class="section-bar">Attributes</h3>
+
+      <div class="name-list">
+        <table>
+        <tr class="top-aligned-row context-row">
+          <td class="context-item-name">anonymizations</td>
+          <td class="context-item-value">&nbsp;[RW]&nbsp;</td>
+          <td class="context-item-desc">
+a hash, the keys are the original filepaths, the values are the
+corresponding anonymized names
+
+</td>
+        </tr>
+        <tr class="top-aligned-row context-row">
+          <td class="context-item-name">destination_dir</td>
+          <td class="context-item-value">&nbsp;[RW]&nbsp;</td>
+          <td class="context-item-desc">
+a string, the directory to which all of the anoymizations and the key
+should be copied
+
+</td>
+        </tr>
+        <tr class="top-aligned-row context-row">
+          <td class="context-item-name">filepaths</td>
+          <td class="context-item-value">&nbsp;[RW]&nbsp;</td>
+          <td class="context-item-desc">
+an array of strings, the paths to the items to be anonymized
+
+</td>
+        </tr>
+        </table>
+      </div>
+    </div>
+      
+
+
+    <!-- if method_list -->
+    <div id="methods">
+      <h3 class="section-bar">Public Class methods</h3>
+
+      <div id="method-M000003" class="method-detail">
+        <a name="M000003"></a>
+
+        <div class="method-heading">
+          <a href="Anonymizer.src/M000003.html" target="Code" class="method-signature"
+            onclick="popupCode('Anonymizer.src/M000003.html');return false;">
+          <span class="method-name">new</span><span class="method-args">(filepaths)</span>
+          </a>
+        </div>
+      
+        <div class="method-description">
+          <p>
+Creates a <a href="Anonymizer.html#M000003">new</a> instance with an array
+of filepaths (strings) A <a href="Anonymizer.html#M000003">new</a> set of
+anaonymizations will be created automatically at initialization. If you
+want to reshuffle the anonymizations you can call <a
+href="Anonymizer.html#M000004">anonymize</a> at any time afterward.
+</p>
+        </div>
+      </div>
+
+      <h3 class="section-bar">Public Instance methods</h3>
+
+      <div id="method-M000004" class="method-detail">
+        <a name="M000004"></a>
+
+        <div class="method-heading">
+          <a href="Anonymizer.src/M000004.html" target="Code" class="method-signature"
+            onclick="popupCode('Anonymizer.src/M000004.html');return false;">
+          <span class="method-name">anonymize</span><span class="method-args">()</span>
+          </a>
+        </div>
+      
+        <div class="method-description">
+          <p>
+Reshuffles the anonymized names
+</p>
+        </div>
+      </div>
+
+      <div id="method-M000005" class="method-detail">
+        <a name="M000005"></a>
+
+        <div class="method-heading">
+          <a href="Anonymizer.src/M000005.html" target="Code" class="method-signature"
+            onclick="popupCode('Anonymizer.src/M000005.html');return false;">
+          <span class="method-name">record_to</span><span class="method-args">(destination_dir, options = {})</span>
+          </a>
+        </div>
+      
+        <div class="method-description">
+          <p>
+Copies the collection of files/directories to the destination directory
+using the current anonymized names. Records the anonymizations in a
+keymap.yml file.
+</p>
+<h3>Options</h3>
+<p>
+:inclue_csv =&gt; true &#8212; writes the csv format keymap in addition to
+the yaml
+</p>
+<p>
+:keymap_name =&gt; &quot;basename&quot; &#8212; uses an alternate file
+basename for the keymap files (the default is &quot;keymap&quot;)
+</p>
+        </div>
+      </div>
+
+
+    </div>
+
+
+  </div>
+
+
+<div id="validator-badges">
+  <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
+</div>
+
+</body>
+</html>

data/doc/classes/Anonymizer.src/M000003.html

@@ -0,0 +1,20 @@
+<?xml version="1.0" encoding="iso-8859-1"?>
+<!DOCTYPE html 
+     PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+     "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+
+<html>
+<head>
+  <title>new (Anonymizer)</title>
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
+  <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
+</head>
+<body class="standalone-code">
+  <pre><span class="ruby-comment cmt"># File lib/anonymizer.rb, line 15</span>
+  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">filepaths</span>)
+    <span class="ruby-ivar">@filepaths</span> = <span class="ruby-identifier">filepaths</span>
+    <span class="ruby-ivar">@anonymizations</span> = <span class="ruby-constant">Hash</span>.<span class="ruby-identifier">new</span>
+    <span class="ruby-identifier">anonymize</span>
+  <span class="ruby-keyword kw">end</span></pre>
+</body>
+</html>

data/doc/classes/Anonymizer.src/M000004.html

@@ -0,0 +1,24 @@
+<?xml version="1.0" encoding="iso-8859-1"?>
+<!DOCTYPE html 
+     PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+     "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+
+<html>
+<head>
+  <title>anonymize (Anonymizer)</title>
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
+  <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
+</head>
+<body class="standalone-code">
+  <pre><span class="ruby-comment cmt"># File lib/anonymizer.rb, line 22</span>
+  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">anonymize</span>
+    <span class="ruby-identifier">keys</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>(<span class="ruby-ivar">@filepaths</span>)
+    <span class="ruby-identifier">idx</span> = <span class="ruby-value">0</span>
+    <span class="ruby-identifier">ndigits</span> = (<span class="ruby-constant">Math</span>.<span class="ruby-identifier">log10</span>(<span class="ruby-ivar">@filepaths</span>.<span class="ruby-identifier">length</span>)<span class="ruby-operator">+</span><span class="ruby-value">1</span>).<span class="ruby-identifier">floor</span>
+    <span class="ruby-keyword kw">until</span> <span class="ruby-identifier">keys</span>.<span class="ruby-identifier">empty?</span>
+      <span class="ruby-ivar">@anonymizations</span>[<span class="ruby-identifier">keys</span>.<span class="ruby-identifier">pick!</span>] = <span class="ruby-node">&quot;%0#{ndigits}d&quot;</span> <span class="ruby-operator">%</span> <span class="ruby-identifier">idx</span>
+      <span class="ruby-identifier">idx</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>
+    <span class="ruby-keyword kw">end</span>
+  <span class="ruby-keyword kw">end</span></pre>
+</body>
+</html>