activerdf_sparql 1.0

data/LICENSE

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+

data/README

@@ -0,0 +1,10 @@
+== ActiveRDF SPARQL adapter
+This is the ActiveRDF adapter to a SPARQL endpoint serving RDF.
+See http://www.activerdf.org/ for more information.
+
+== License
+This adapter is distributed under the LGPL license.
+
+== Authors
+* Eyal Oren
+* Sebastian Gerke

data/Rakefile

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+require 'rake'
+require 'rake/testtask'
+require 'rake/clean'
+require 'rake/gempackagetask'
+require 'rake/rdoctask'
+require '../tools/rakehelp'
+require 'fileutils'
+include FileUtils
+
+setup_tests
+setup_clean ["pkg", "lib/*.bundle", "*.gem", ".config"]
+
+setup_rdoc ['README', 'LICENSE', 'lib/**/*.rb', 'doc/**/*.rdoc']
+
+desc "Does a full compile, test run"
+task :default => [:test, :package]
+
+version="1.0"
+name="activerdf_sparql"
+
+setup_gem(name, version) do |spec|
+  spec.summary = "ActiveRDF adapter to SPARQL endpoint" 
+  spec.description = spec.summary
+  spec.author="Eyal Oren <eyal.oren@deri.org"
+  spec.add_dependency('gem_plugin', '>= 0.2.1')
+  spec.add_dependency('activerdf', '>= 0.9.2')
+end
+
+
+task :install => [:package] do
+  sh %{sudo gem install pkg/#{name}-#{version}.gem}
+end
+
+task :uninstall => [:clean] do
+  sh %{sudo gem uninstall #{name}}
+end
+
+task :reinstall => [:uninstall, :install]

data/lib/activerdf_sparql/init.rb

@@ -0,0 +1,10 @@
+# add the directory in which this file is located to the ruby loadpath
+file =
+if File.symlink?(__FILE__)
+  File.readlink(__FILE__)
+else
+  __FILE__
+end
+$: << File.dirname(File.expand_path(file))
+
+require 'sparql'

data/lib/activerdf_sparql/sparql.rb

@@ -0,0 +1,144 @@
+# SPARQL adapter
+#
+# Author:: Eyal Oren and Sebastian Gerke
+# Copyright:: (c) 2005-2006
+# License:: LGPL
+require 'active_rdf'
+require 'queryengine/query2sparql'
+require 'open-uri'
+require 'cgi'
+require 'rexml/document'
+require "#{File.dirname(__FILE__)}/sparql_result_parser"
+  
+
+class SparqlAdapter < ActiveRdfAdapter
+	$log.info "loading SPARQL adapter"
+	ConnectionPool.register_adapter(:sparql, self)
+	
+	# Instantiate the connection with the SPARQL Endpoint.
+	# available parameters:
+	# * :url => url: endpoint location e.g. "http://m3pe.org:8080/repositories/test-people"
+	# * :results => one of :xml, :json, :sparql_xml
+	def initialize(params = {})	
+		@reads = true
+		@writes = false
+
+		@url = params[:url] || ''
+		@result_format = params[:results] || :json
+		
+		known_formats = [:xml, :json, :sparql_xml]
+		raise ActiveRdfError, "Result format unsupported" unless 
+		known_formats.include?(@result_format)
+		
+		$log.info "Sparql adapter initialised #{inspect}"
+	end
+
+	def size
+		query(Query.new.select(:s,:p,:o).where(:s,:p,:o)).size
+	end
+
+	# query datastore with query string (SPARQL), returns array with query results
+	# may be called with a block
+	def query(query, &block)
+		time = Time.now
+    qs = Query2SPARQL.translate(query)
+		$log.debug "executing sparql query #{query}"
+
+		execute_sparql_query(qs, header(query), &block)
+	end
+		
+	# do the real work of executing the sparql query
+	def execute_sparql_query(qs, header, &block)
+		$log.debug "executing query #{qs} on url #@url"
+
+		# encoding query string in URL
+		url = "#@url?query=#{CGI.escape(qs)}"
+
+    # querying sparql endpoint
+		begin 
+			response = open(url, header).read
+		rescue OpenURI::HTTPError => e
+			raise ActiveRdfError, "could not query SPARQL endpoint, server said: #{e}"
+			return []
+		rescue Errno::ECONNREFUSED
+			raise ActiveRdfError, "connection refused on SPARQL endpoint #@url"
+			return []
+	 	end
+
+    # we parse content depending on the result format
+    results = case @result_format
+						 	when :json 
+								parse_json(response)
+						 	when :xml, :sparql_xml
+							 	parse_xml(response)
+						 	end
+
+    if block_given?
+      results.each do |*clauses|
+        yield(*clauses)
+      end
+    else
+      results
+    end
+	end
+	
+	private
+	# constructs correct HTTP header for selected query-result format
+	def header(query)
+		case @result_format
+		when :json
+			{ 'accept' => 'application/sparql-results+json' }
+		when :xml
+			{ 'accept' => 'application/rdf+xml' }
+		when :sparql_xml
+		  { 'accept' => 'application/sparql-results+xml' }
+		end
+	end
+
+  # parse json query results into array
+	def parse_json(s)
+    require 'json'
+    
+    parsed_object = JSON.parse(s)
+    return [] if parsed_object.nil?
+    
+    results = []    
+    vars = parsed_object['head']['vars']
+    objects = parsed_object['results']['bindings']
+    if vars.length > 1
+      objects.each do |obj|
+        result = []
+        vars.each do |v|
+          result << create_node( obj[v]['type'], obj[v]['value'])
+        end
+        results << result
+      end
+    else
+      objects.each do |obj| 
+        obj.each_value do |e|
+          results << create_node(e['type'], e['value'])
+        end
+      end
+    end
+    results
+  end
+  
+  # parse xml stream result into array
+  def parse_xml(s)
+    parser = SparqlResultParser.new
+    REXML::Document.parse_stream(s, parser)
+    parser.result
+  end
+  
+  # create ruby objects for each RDF node
+  def create_node(type, value)
+    case type
+    when 'uri'
+      RDFS::Resource.new(value)
+    when 'bnode'
+      nil
+    when 'literal','typed-literal'
+      value.to_s
+    end
+  end
+end

data/lib/activerdf_sparql/sparql_result_parser.rb

@@ -0,0 +1,58 @@
+# parser for SPARQL XML result set
+#
+# Author:: Sebastian Gerke
+# Copyright:: (c) 2005-2006
+# License:: LGPL
+
+class SparqlResultParser
+  attr_reader :result
+
+  def initialize
+    @result = []
+    @vars = []
+    @current_type = nil
+  end
+  
+  def tag_start(name, attrs)
+		case name
+		when 'variable'
+      @vars << attrs['name']
+		when 'result'
+      @current_result = []
+		when 'binding'
+      @index = @vars.index(attrs['name'])
+		when 'bnode', 'literal', 'typed-literal', 'uri'
+      @current_type = name
+    end
+  end
+  
+  def tag_end(name)
+    if name == "result"
+      @result << @current_result
+    elsif name == 'bnode' || name == 'literal' || name == 'typed-literal' || name == 'uri'
+      @current_type = nil
+    elsif name == "sparql"
+    end
+  end
+  
+  def text(text)
+    if !@current_type.nil?
+      @current_result[@index] = create_node(@current_type, text)  
+    end
+  end
+
+  # create ruby objects for each RDF node
+  def create_node(type, value)
+    case type
+    when 'uri'
+      RDFS::Resource.new(value)
+    when 'bnode'
+      nil
+    when 'literal','typed-literal'
+      value.to_s
+    end
+  end
+  
+  def method_missing (*args)
+  end
+end

data/test/test_sparql_adapter.rb

@@ -0,0 +1,108 @@
+# Author:: Eyal Oren
+# Copyright:: (c) 2005-2006
+# License:: LGPL
+
+require 'active_rdf'
+require 'test/unit'
+require 'federation/federation_manager'
+require 'queryengine/query'
+
+class TestSparqlAdapter < Test::Unit::TestCase
+  def setup
+    ConnectionPool.clear
+    @adapter = ConnectionPool.add_data_source(:type => :sparql, :url => "http://m3pe.org:8080/repositories/test-people/", :results => :sparql_xml)
+  end
+
+  def teardown
+  end
+
+  def test_registration
+    assert_instance_of SparqlAdapter, @adapter
+  end
+
+  def test_simple_query
+    result = Query.new.select(:s).where(:s, Namespace.lookup(:rdf,:type), :t).execute.first
+    assert_instance_of RDFS::Resource, result
+
+    second_result = Query.new.select(:s, :p).where(:s, :p, 27).execute.flatten
+    assert_equal 2, second_result.size
+    assert_instance_of RDFS::Resource, second_result[0]
+    assert_instance_of RDFS::Resource, second_result[1]
+  end
+
+  def test_query_with_block
+    # this has to be defined in front of the block, to afterwards verify that the contents of the
+    # block were indeed executed
+    reached_block = false
+
+    Query.new.select(:s,:p).where(:s,:p, 27).execute do |s,p|
+      reached_block = true
+      assert_equal 'http://activerdf.org/test/eyal', s.uri
+      assert_equal 'http://activerdf.org/test/age', p.uri
+    end
+
+    assert reached_block, "querying with a block does not work"
+  end
+
+  # TODO: move this to the query test cases
+  def test_query_refuses_string_in_where_clause_subject_or_predicate
+    assert_raises ActiveRdfError do
+      Query.new.select(:s).where("http://test.org/uri",:p, :o).execute
+    end
+  end
+
+  def test_refuse_to_write
+    eyal = RDFS::Resource.new 'http://activerdf.org/test/eyal'
+    age = RDFS::Resource.new 'foaf:age'
+    test = RDFS::Resource.new 'test'
+
+    # NameError gets thown if the method is unknown
+    assert_raises NoMethodError do
+      @adapter.add(eyal, age, test)
+    end
+  end
+
+  def test_federated_query
+    # we first ask one sparl endpoint
+    first_size = Query.new.select(:o).where(:s, :p, :o).execute(:flatten => false).size
+    ConnectionPool.clear
+
+    # then we ask the second endpoint
+    ConnectionPool.add_data_source(:type => :sparql, :url =>
+    "http://www.m3pe.org:8080/repositories/mindpeople", :results => :sparql_xml)
+
+    second_size = Query.new.select(:o).where(:s, :p, :o).execute(:flatten =>
+    false).size
+
+    ConnectionPool.clear
+
+    # now we ask both
+    ConnectionPool.add_data_source(:type => :sparql, :url =>
+    "http://m3pe.org:8080/repositories/test-people/", :results => :sparql_xml)
+    ConnectionPool.add_data_source(:type => :sparql, :url =>
+    "http://www.m3pe.org:8080/repositories/mindpeople", :results => :sparql_xml)
+
+    union_size = Query.new.select(:o).where(:s, :p, :o).execute(:flatten => false).size
+    assert_equal first_size + second_size, union_size
+  end
+
+  def test_person_data
+    eyal = RDFS::Resource.new("http://activerdf.org/test/eyal")
+    eye = RDFS::Resource.new("http://activerdf.org/test/eye")
+    type = RDFS::Resource.new("http://www.w3.org/1999/02/22-rdf-syntax-ns#type")
+    age = RDFS::Resource.new("http://activerdf.org/test/age")
+    person = RDFS::Resource.new("http://www.w3.org/2000/01/rdf-schema#Resource")
+    resource = RDFS::Resource.new("http://activerdf.org/test/Person")
+
+    color = Query.new.select(:o).where(eyal, eye,:o).execute
+    assert 'blue', color
+    assert_instance_of String, color
+
+    age_result = Query.new.select(:o).where(eyal, age, :o).execute
+    assert 27, age_result
+
+    types_result = Query.new.select(:o).where(eyal, type, :o).execute
+    assert types_result.include?(person)
+    assert types_result.include?(resource)
+  end
+end

metadata

@@ -0,0 +1,70 @@
+--- !ruby/object:Gem::Specification 
+rubygems_version: 0.9.0
+specification_version: 1
+name: activerdf_sparql
+version: !ruby/object:Gem::Version 
+  version: "1.0"
+date: 2006-11-02 00:00:00 +00:00
+summary: ActiveRDF adapter to SPARQL endpoint
+require_paths: 
+- lib
+email: 
+homepage: 
+rubyforge_project: 
+description: ActiveRDF adapter to SPARQL endpoint
+autorequire: 
+default_executable: 
+bindir: bin
+has_rdoc: true
+required_ruby_version: !ruby/object:Gem::Version::Requirement 
+  requirements: 
+  - - ">"
+    - !ruby/object:Gem::Version 
+      version: 0.0.0
+  version: 
+platform: ruby
+signing_key: 
+cert_chain: 
+post_install_message: 
+authors: 
+- Eyal Oren <eyal.oren@deri.org
+files: 
+- LICENSE
+- README
+- Rakefile
+- test/test_sparql_adapter.rb
+- lib/activerdf_sparql
+- lib/activerdf_sparql/sparql.rb
+- lib/activerdf_sparql/sparql_result_parser.rb
+- lib/activerdf_sparql/init.rb
+test_files: []
+
+rdoc_options: []
+
+extra_rdoc_files: 
+- README
+executables: []
+
+extensions: []
+
+requirements: []
+
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  name: gem_plugin
+  version_requirement: 
+  version_requirements: !ruby/object:Gem::Version::Requirement 
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: 0.2.1
+    version: 
+- !ruby/object:Gem::Dependency 
+  name: activerdf
+  version_requirement: 
+  version_requirements: !ruby/object:Gem::Version::Requirement 
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: 0.9.2
+    version: