absee 1.0 → 1.1

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA1:
+  metadata.gz: 4963ba45850feb06cffd7a0aaf3c24514fbe49cd
+  data.tar.gz: 341d131db9e2539ecd398dd58f15ab4e2c6645d4
+SHA512:
+  metadata.gz: f6954b89ae307421c24807d7f6b0acf57d81d74bcf91784985abd0fd7a03c8981769a81aeb78b54b9499404f3c5b8164d9bf73475053836f5e0072891d6eb213
+  data.tar.gz: '033698b4ab7bdcae9a1578e61b1f865d6a86191b6f3aa9b946d4726ba1528b047901d02c6fa42b06c9a80c869f8c446082c67a3492e0a34a2d3471f032bb3118'

data/lib/absee.rb

@@ -31,8 +31,15 @@ class ABSee
   #== Returns:
   #  Six arrays: trace data for A, C, G, T, called sequence, and peak indexes
   def read(filename)
-    #opens ab1 as a File object
-    abFile = open(filename)
+    if filename.instance_of?(StringIO) or filename.instance_of?(File)
+      abFile = filename
+    elsif filename.instance_of? String
+      #opens ab1 as a File object
+      abFile = open(filename)
+    else
+      raise "Don't know what to do with input type #{filename.class}"
+    end
+
     byteArray = ""
     #// here we read the first four bytes. It is important
     #// to remember that we do not seek back the file, just
@@ -48,10 +55,9 @@ class ABSee
   end
 
 
-  
   ##accessors
   #== Returns:
-  #  the trace data for adenine
+  #  an array with the trace data for adenine
   def get_traceA()
     return @traceA
   end

metadata

@@ -1,8 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: absee
 version: !ruby/object:Gem::Version
-  version: '1.0'
-  prerelease: 
+  version: '1.1'
 platform: ruby
 authors:
 - Jenny Cheng
@@ -11,8 +10,8 @@ bindir: bin
 cert_chain: []
 date: 2012-11-14 00:00:00.000000000 Z
 dependencies: []
-description: .ab1 reader / ABIF reader; extracts the peak indexes, called sequence,
-  quality scores, and ACGT values from sequencing files
+description: ".ab1 reader / ABIF reader; extracts the peak indexes, called sequence,
+  quality scores, and ACGT values from sequencing files"
 email: jencheng@ginkgobioworks.com
 executables: []
 extensions: []
@@ -22,27 +21,25 @@ files:
 homepage: http://rubygems.org/gems/absee
 licenses:
 - MIT
+metadata: {}
 post_install_message: 
 rdoc_options: []
 require_paths:
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>='
+  - - ">="
     - !ruby/object:Gem::Version
       version: 1.9.3
 required_rubygems_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>='
+  - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 1.8.23
+rubygems_version: 2.6.11
 signing_key: 
-specification_version: 3
-summary: .ab1 reader / ABIF reader
+specification_version: 4
+summary: ".ab1 reader / ABIF reader"
 test_files: []
-has_rdoc: