SilkSlider 0.2.0 → 0.2.1

Sign up to get free protection for your applications and to get access to all the features.
Files changed (4) hide show
  1. checksums.yaml +4 -4
  2. data/VERSION +1 -1
  3. data/bin/silk_slider +9 -2
  4. metadata +2 -2
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
1
1
  ---
2
2
  SHA1:
3
- metadata.gz: ad393f3f24c8137ec1817bb55295068dd5ce4af6
4
- data.tar.gz: d3376592a5646b87db935532e8de336403c24f63
3
+ metadata.gz: 1216ff0f3bc361d27868bcb7663213c1dc32cf4c
4
+ data.tar.gz: 6893e3334b1c17bc4a66cc740420955f1c7b78f8
5
5
  SHA512:
6
- metadata.gz: f9a00a8bb7641df0c92e7c85956266d6c003f591bb6897e7168b46e67e79a85b1ff4f013436cfa3e991d5473a501ff087dcce1f014f7372713352beee0666492
7
- data.tar.gz: 350b0eadbb521d99ae82868c9127c51df7b0bab7a805256144d8ee78ee447c4e88e05441407af63e7937d566c2c13588ebb0e87d7bc1ef2d7c0ed71b2719db78
6
+ metadata.gz: b9d2c0105bb463354a00b463722558b2f3081d59a1f2305ab17722efec2a749f1ed0e66478ecb05093bb8af578ad6c81413944f9584c35ac29c3cad7dbe5c6bf
7
+ data.tar.gz: 3356e40a50ca27ccb8393ca944d0e93b12428c25c2aeeb1ed62faaec7aa75a20d76a13c56f05054a4c58b1bb98a90b0a0e315d4a00176f502b722ab05e005abb
data/VERSION CHANGED
@@ -1 +1 @@
1
- 0.2.0
1
+ 0.2.1
@@ -68,11 +68,18 @@ Bio::FlatFile.open(Bio::FastaFormat, ARGF).each do |seq|
68
68
  if example_result.nil?
69
69
  example_result = signalp_result
70
70
  log.info "Using SignalP version: #{example_result.class}" if log.info?
71
+ if !example_result.kind_of?(Bio::SignalP::Version3::Result)
72
+ log.warn "================================================================================"
73
+ log.warn "SilkSlider is intended for use with SignalP version 3, where a different version is being used here."
74
+ log.warn "Your results may vary...."
75
+ log.warn "To specify a particular signalp binary to be used, use the --signalp-binary flag"
76
+ log.warn "================================================================================"
77
+ end
71
78
  end
72
79
  num_considered += 1
73
80
 
74
- log.debug "Sequence #{seq.definition} predicted by SignalP? #{signalp_result.prediction}" if log.debug?
75
- if signalp_result.prediction
81
+ log.debug "Sequence #{seq.definition} predicted by SignalP? #{signalp_result.signal?}" if log.debug?
82
+ if signalp_result.signal?
76
83
  sequence_without_signal_peptide = signalp_result.cleave(seq.seq)
77
84
 
78
85
  tmhmm_protein = tmhmm_runner.calculate sequence_without_signal_peptide
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: SilkSlider
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.2.0
4
+ version: 0.2.1
5
5
  platform: ruby
6
6
  authors:
7
7
  - Carmel McDougall
@@ -10,7 +10,7 @@ authors:
10
10
  autorequire:
11
11
  bindir: bin
12
12
  cert_chain: []
13
- date: 2014-07-13 00:00:00.000000000 Z
13
+ date: 2014-07-16 00:00:00.000000000 Z
14
14
  dependencies:
15
15
  - !ruby/object:Gem::Dependency
16
16
  name: bio-signalp