SemanticSBML 0.0.1

checksums.yaml

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+---
+SHA1:
+  metadata.gz: b151c38448ad2404065630a79e4aff5719906a46
+  data.tar.gz: 98a483f571fb32302b6b42ab9dd30f1cfb11b54d
+SHA512:
+  metadata.gz: 2e6352c86842f5e468c32b6a7850e07c134fb1431cdb128631995f6ae59247198f32ce3addbeff0972d83544a9209a640e21d774a0c0c756039565d253b63dcf
+  data.tar.gz: f2240f39b912ddd6ad878148bbe36c1222d0dd911e5757528c29d2cda3ce985d0a8767da8737880b5e49737e757e42d3826530ed6b75c8596cfdcb8d7e10f366

data/lib/SemanticSBML.rb

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+require 'typhoeus'
+require 'json'
+
+class SemanticSBML
+
+  def self.get_supported_dbs
+    JSON.parse(Typhoeus.get("http://www.semanticsbml.org/semanticSBML/annotate/imported_resources.json").response_body)["result"].uniq
+  end
+
+  def self.get_linked_ressources
+    JSON.parse(Typhoeus.get("http://www.semanticsbml.org/semanticSBML/annotate/linked_resources.json").response_body)["result"].uniq
+  end
+
+  def self.consult(name,precision,full_info)
+    #the arguments have to be valid
+    raise "The precision argument has to be between 0 and 1" unless (0...1).include?(precision)
+    raise "The info flag has to be 1 or 0" if ![1,0].include?(full_info)
+  
+    JSON.parse(Typhoeus.get("http://www.semanticsbml.org/semanticSBML/annotate/search.json?q=#{name}&precision=#{full_info}&full_info=#{full_info}").response_body)["result"].uniq.first
+  end
+
+  def self.show_matches(matches)
+    matches.each do |elem|
+      puts "hyperlink: #{elem["hyperlink"]}"
+      puts "uri: #{elem["uri"]}"
+      puts "name: #{elem["name"]}"
+      puts ""
+    end
+  end
+
+  def self.get_readable_miriam_urn(miriam_urn)
+    Typhoeus.get("http://www.semanticsbml.org/semanticSBML/annotate/name?urn=#{miriam_urn}").response_body
+  end
+
+  def self.get_url_to_miriam_urn(miriam_urn)
+    Typhoeus.get("http://www.semanticsbml.org/semanticSBML/annotate/name?urn=#{miriam_urn}").response_body
+  end
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: SemanticSBML
+version: !ruby/object:Gem::Version
+  version: 0.0.1
+platform: ruby
+authors:
+- Steven Stadler
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2014-01-11 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: typhoeus
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.6'
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 0.6.7
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.6'
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 0.6.7
+- !ruby/object:Gem::Dependency
+  name: json
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.8'
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 1.8.1
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.8'
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 1.8.1
+description: 'SemanticSBML is an application to annotate stoichiometric models. This
+  gem has the purpose to consult the REST API of this application to support the further
+  work of bioinformaticians. '
+email: steven.stadler@gmail.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- lib/SemanticSBML.rb
+homepage: http://www.joermungandr.com
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.2.1
+signing_key: 
+specification_version: 4
+summary: A interface to work with the SemanticSBML REST API!
+test_files: []