PRbed 0.1.0 → 0.1.1

checksums.yaml

@@ -1,7 +1,7 @@
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+  data.tar.gz: 8b5aa38cb5779e1c62f3fa17ff85817ff3e93cead80eaa215a63b0ad595863cd
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data/.github/workflows/gem-push.yml

@@ -0,0 +1,36 @@
+name: Ruby Gem
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  build:
+    name: Build + Publish
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Ruby
+      uses: ruby/setup-ruby@v1
+      with:
+        ruby-version: 2.7
+        bundler-cache: true
+
+    - name: Run test
+      run: |
+        bundle install
+        bundle exec rake
+      
+    - name: Publish to RubyGems
+      run: |
+        mkdir -p $HOME/.gem
+        touch $HOME/.gem/credentials
+        chmod 0600 $HOME/.gem/credentials
+        printf -- "---\n:rubygems_api_key: ${GEM_HOST_API_KEY}\n" > $HOME/.gem/credentials
+        gem build *.gemspec
+        gem push *.gem
+      env:
+        GEM_HOST_API_KEY: "${{secrets.RUBYGEMS_AUTH_TOKEN}}"

data/README.md

@@ -22,8 +22,7 @@ Or install it yourself as:
 
 ```ruby
 require "PRbed"
-r = PRbed::Reader.new("test/test") # bfile prefix
-r.each_variants do |variant, fam, genotypes|
+PRbed::Reader.new("test/test") do |variant, fam, genotypes| # bfile prefix
   p [variant, fam, genotypes]
 end
 ```

data/lib/PRbed.rb

@@ -1,5 +1,3 @@
-require "PRbed/version"
-
 module PRbed
   class PRBedError < StandardError; end
 
@@ -37,10 +35,11 @@ module PRbed
   class Reader
     attr_reader :fam, :bim
 
-    def initialize(bfile)
+    def initialize(bfile, &block)
       @bfile = bfile
       @fam = load_fam("#{bfile}.fam")
       @bim = load_bim("#{bfile}.bim")
+      each_variants(&block) if block
     end
 
     def each_variants
@@ -65,6 +64,10 @@ module PRbed
 
     alias_method :each, :each_variants
 
+    def inspect
+      "#<#{self.class}: @bfile='#{@bfile}' @bim=#{@bim.size} @fam=#{@fam.size}>"
+    end
+
     private
 
     def load_fam(fam)

data/lib/PRbed/version.rb

@@ -1,3 +1,3 @@
 module PRbed
-  VERSION = "0.1.0"
+  VERSION = "0.1.1"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: PRbed
 version: !ruby/object:Gem::Version
-  version: 0.1.0
+  version: 0.1.1
 platform: ruby
 authors:
 - holrock
 autorequire: 
 bindir: exe
 cert_chain: []
-date: 2020-07-24 00:00:00.000000000 Z
+date: 2020-07-29 00:00:00.000000000 Z
 dependencies: []
 description: pure ruby implementation of PLINK bed file stream reader
 email:
@@ -17,6 +17,7 @@ executables: []
 extensions: []
 extra_rdoc_files: []
 files:
+- ".github/workflows/gem-push.yml"
 - ".gitignore"
 - ".travis.yml"
 - Gemfile