CodonUsage 0.0.4 → 0.0.5
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- checksums.yaml +4 -4
- data/CodonUsage.gemspec +1 -0
- data/README.md +3 -3
- data/lib/CodonUsage/version.rb +1 -1
- data/spec/CodonUsage_spec.rb +3 -0
- metadata +3 -3
checksums.yaml
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: af2549f93bbdd35c721a0c2d99d4e9548e13958d
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data.tar.gz: 2fc033a88ed24ff97b6ff6e429fc5377841b8b43
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SHA512:
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metadata.gz:
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metadata.gz: 560609d20ab6caa80437d017f318055b5ee649aea1ec0ebf65ffeffac72533f1d277a28936903434e3a6caa6c61292fc93a5d1c12105556e80f9d3935916ad9d
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data.tar.gz: de9325603ed2628a37b2d338076f0949e85235fa78a8a2b03f127f29a0f04d3aa0dd72ff8c0a684ade776ebf8592b790e5abc53bda7792d4ece935527014e46b
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data/CodonUsage.gemspec
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@@ -18,6 +18,7 @@ Gem::Specification.new do |spec|
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spec.test_files = spec.files.grep(%r{^(test|spec|features)/})
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spec.require_paths = ["lib"]
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spec.required_ruby_version = '>=2.0'
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spec.add_development_dependency "bundler", "~> 1.5"
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spec.add_development_dependency "rspec", "~> 2.14"
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end
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data/README.md
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A ruby gem that parses Codon Usage table provided by: http://www.kazusa.or.jp/codon/ that output the information in a hash or JSON format. You can find this gem on http://rubygems.org/gems/CodonUsage
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## Version
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-
0.0.
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+
0.0.5
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## Disclaimer
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I write this gem because bioruby doesn't provide any library for me to do this job, and this is my first ruby gem. Hope this gem can help people in the bioinformatics field! :)
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## Before start
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* Please use Ruby
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* Please use Ruby 2.0 or above
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## Installation
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$ gem install CodonUsage
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## Usage
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require "CodonUsage" # load the gem
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-
foo = CodonUsage::KazusaDB.new(aa
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foo = CodonUsage::KazusaDB.new(aa: "1", species: "9606") # Noted that parameters should be STRING
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p foo.getURL
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p foo.getHash
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p foo.to_json
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data/lib/CodonUsage/version.rb
CHANGED
data/spec/CodonUsage_spec.rb
CHANGED
@@ -17,6 +17,9 @@ describe CodonUsage::KazusaDB do
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it "#species:Mycobacterium tuberculosis H37Rv" do
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CodonUsage::KazusaDB.new(species: "83332").getURL.should == "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=83332&aa=1&style=N"
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end
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it "#species: \"83332\" + #aa: \"11\"" do
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CodonUsage::KazusaDB.new(aa: "11", species: "83332").getURL.should == "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=83332&aa=11&style=N"
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end
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it "#getHash working?" do
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p CodonUsage::KazusaDB.new(species: "83332").getHash
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end
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metadata
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--- !ruby/object:Gem::Specification
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name: CodonUsage
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version: !ruby/object:Gem::Version
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version: 0.0.
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version: 0.0.5
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platform: ruby
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authors:
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- proxhotdog
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2014-02-
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+
date: 2014-02-28 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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@@ -69,7 +69,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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version: '2.0'
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required_rubygems_version: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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